View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20006_low_3 (Length: 352)
Name: NF20006_low_3
Description: NF20006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20006_low_3 |
 | |
|
| [»] chr1 (18 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 13271628 - 13271962
Alignment:
| Q |
18 |
ctgatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttgg |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13271628 |
ctgatatccatctctcaggcttaaactccaagcaatcaccaccccatacatgttccattcttcccattgcatacaaagagtatattaactttgtgtttgg |
13271727 |
T |
|
| Q |
118 |
accaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13271728 |
accaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagtctcaaggtttcacatatagctgca |
13271827 |
T |
|
| Q |
218 |
tgaaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttg |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13271828 |
tgaaggtaaatcagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaatgatctttgatctcttgaataagttttg |
13271927 |
T |
|
| Q |
318 |
cttccacaataggatgagttgaaacaagccaaaag |
352 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
13271928 |
cttccacattaggatgagttgaaacaagccaaaag |
13271962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 13244671 - 13244337
Alignment:
| Q |
18 |
ctgatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttgg |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
13244671 |
ctgatatccatctttcaggcttaaattccaagcaatcatctccccatatttgttgcatccttcccattgcatacaaagaatatatcaactttgtatttgg |
13244572 |
T |
|
| Q |
118 |
accaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgca |
217 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| || | || |||||||| | ||||| | ||||||||| |||||||||||||||||||| ||| || |
|
|
| T |
13244571 |
accaacatgttctccactaggtagtatatcagatttgatagcgcacttgtgctgaaatgccagaggaggatatagcctcaaggtttcacatatggctcca |
13244472 |
T |
|
| Q |
218 |
tgaaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttg |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
13244471 |
tgaaggtaaacaagcttatcaatcttttccacgtttaaattattgattaaattctcctcttgtgttagacaattatctttgatctcttgaataattttcg |
13244372 |
T |
|
| Q |
318 |
cttccacaataggatgagttgaaacaagccaaaag |
352 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13244371 |
cttccccaataggatgagttgaaacaagccaaaag |
13244337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 19279316 - 19278984
Alignment:
| Q |
20 |
gatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggac |
119 |
Q |
| |
|
||||||||||| |||||| ||| || | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
19279316 |
gatatccatctctcaggccgaaattctaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttagac |
19279217 |
T |
|
| Q |
120 |
caacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatg |
219 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
19279216 |
taacatggtctccactaggtagtatatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcacatatagctccatg |
19279117 |
T |
|
| Q |
220 |
aaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgct |
319 |
Q |
| |
|
||| ||||| |||||||||| | || ||| | ||||| |||||||||| ||||||| ||||| ||| ||| | |||||||||||||||| ||||||| |
|
|
| T |
19279116 |
aagataaactagcttatcaagctctttcacactaaaatttgtgatcaaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgct |
19279017 |
T |
|
| Q |
320 |
tccacaataggatgagttgaaacaagccaaaag |
352 |
Q |
| |
|
|| ||||||||||||||||| || ||||||||| |
|
|
| T |
19279016 |
tcgacaataggatgagttgatacgagccaaaag |
19278984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 12964024 - 12963804
Alignment:
| Q |
19 |
tgatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttgga |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
12964024 |
tgatatccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttgga |
12963925 |
T |
|
| Q |
119 |
ccaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcat |
218 |
Q |
| |
|
| |||||||| ||||||||||| |||||| || |||| |||||||||||| |||||||||||||||||||||||||| || | |||||| |||||| ||| |
|
|
| T |
12963924 |
ctaacatggtctccactaggtaatatatctgatttaattgcacacttgtgttcaaatggtataggaggataaagccttaaagcttcacaaatagctccat |
12963825 |
T |
|
| Q |
219 |
gaaggtaaacaagcttatcaa |
239 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
12963824 |
gaagataaacaagcttatcaa |
12963804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 13086149 - 13086480
Alignment:
| Q |
18 |
ctgatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttgg |
117 |
Q |
| |
|
||||||||||||| || |||||||| || |||| ||| | |||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
13086149 |
ctgatatccatctctcgggcttaaattcgaagcgatccttaccccatatttgtttcatccttcccattgcatacaaagagtatattaacttagtatttgg |
13086248 |
T |
|
| Q |
118 |
accaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgca |
217 |
Q |
| |
|
||||| | |||||||||||||||||||| || | |||||||||||| | |||||||| |||||||||||||||||| | ||||||||||||| || |
|
|
| T |
13086249 |
tttaacataatctccactaggtagtatatcagctttgattgcacacttgtgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctcca |
13086348 |
T |
|
| Q |
218 |
tgaaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttg |
317 |
Q |
| |
|
|||||||| || || |||| || |||||||| |||||||| ||| |||||| ||||| |||| ||||||||||||||| ||||||||||| | ||| | |
|
|
| T |
13086349 |
tgaaggtacactagtttattaagcttttcaactcttaaattagtgaccaaattatcctcatgtgatagacaattatcttttatctcttgaattattttag |
13086448 |
T |
|
| Q |
318 |
cttccacaataggatgagttgaaacaagccaa |
349 |
Q |
| |
|
||||||| || ||||||||||||||||||| |
|
|
| T |
13086449 |
cttccactatgaaatgagttgaaacaagccaa |
13086480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 13081015 - 13080682
Alignment:
| Q |
18 |
ctgatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttgg |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| || ||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
13081015 |
ctgatatccatctctcaggcttaaactccaagcaatcctctccccatatttgctccatccttcccattgcatacaaagaatatattaactttgtatttgg |
13080916 |
T |
|
| Q |
118 |
accaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgca |
217 |
Q |
| |
|
|| |||||||| ||||||||| ||| |||| || || | ||||||||||| | ||||| || || |||||| ||||| |||| ||||||||| ||| || |
|
|
| T |
13080915 |
actaacatggtctccactaggaagtttatccgatttgatagcacacttgtgctgaaatgctacagaaggatatagccttaaggcttcacatatggctcca |
13080816 |
T |
|
| Q |
218 |
tgaaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttg |
317 |
Q |
| |
|
||||||||||| |||||||||| | ||| ||| ||||||| ||| |||||||| || ||| ||| |||||||||||||||||||||||||| ||| |
|
|
| T |
13080815 |
tgaaggtaaactagcttatcaagctcttccacacctaaattagcgataaaattctcatcgtgttttaaacaattatctttgatctcttgaataattttac |
13080716 |
T |
|
| Q |
318 |
cttccacaataggatgagttgaaacaagccaaaa |
351 |
Q |
| |
|
| || || ||||||| |||||||| |||||||| |
|
|
| T |
13080715 |
catctaccctaggatgcgttgaaaccagccaaaa |
13080682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 30368258 - 30367931
Alignment:
| Q |
18 |
ctgatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttgg |
117 |
Q |
| |
|
|||||| |||||| ||||||||||| |||| |||||| || ||||||| | ||||||||||||||| |||||||||||||| |||||||| || ||||| |
|
|
| T |
30368258 |
ctgatacccatctctcaggcttaaattccatgcaatcttctccccatattttttccatccttcccatagcatacaaagagtaaattaacttggtatttgg |
30368159 |
T |
|
| Q |
118 |
accaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgca |
217 |
Q |
| |
|
|| ||||| | ||||||||||||||||||||| || | ||||| | | ||||| |||| || |||||| | ||||| || ||||||||||||| || |
|
|
| T |
30368158 |
actaacattctctccactaggtagtatatcagatttgattgcactgataagctcaaaaggtacagtaggatacaacctcatggattcacatatagctcca |
30368059 |
T |
|
| Q |
218 |
tgaaggtaaacaagcttatcaatg-ttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagtttt |
316 |
Q |
| |
|
|| ||||| || |||||||||| | ||| || |||| || || ||| ||||||| | || || || |||||||||||||||||||||||||| ||| |
|
|
| T |
30368058 |
tggaggtagactagcttatcaaggctttccaccattgaagtt----atccaattctcatgttttgatacacaattatctttgatctcttgaataattttg |
30367963 |
T |
|
| Q |
317 |
gcttccacaataggatgagttgaaacaagcca |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
30367962 |
gcttccacaataggatgagttgaaacaagcca |
30367931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 13129872 - 13130197
Alignment:
| Q |
20 |
gatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggac |
119 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||| || || ||||||| ||||||||||||||||| | |||||||||||| || || |||| ||||||| |
|
|
| T |
13129872 |
gatatccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagaatacaaagagtaaatcaaagttgtatttggac |
13129971 |
T |
|
| Q |
120 |
caacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatg |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || | || ||| | || ||||| |||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
13129972 |
taacatggtatccactaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatg |
13130071 |
T |
|
| Q |
220 |
aaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgct |
319 |
Q |
| |
|
||||| || |||||||||| | || | ||| || ||| ||| |||||||||||| ||||||||||||||||||||||| | |||| || |
|
|
| T |
13130072 |
gaggtatactagcttatcaagatccacatgcctcaaagta---atccgattaccctcttgtgttaaccaattatctttgatctcttgaatgattttttct |
13130168 |
T |
|
| Q |
320 |
tccacaataggatgagttgaaacaagcca |
348 |
Q |
| |
|
||||||||||||| |||||||| |||||| |
|
|
| T |
13130169 |
tccacaataggataagttgaaagaagcca |
13130197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 13204501 - 13204831
Alignment:
| Q |
18 |
ctgatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttgg |
117 |
Q |
| |
|
|||||| |||||| ||||||||||| |||| ||| || || ||||||| ||||||||||||||||| || ||||||||||| | |||| |||| ||||| |
|
|
| T |
13204501 |
ctgatacccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttgg |
13204600 |
T |
|
| Q |
118 |
accaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgca |
217 |
Q |
| |
|
|| |||| | | |||||||||||||||||| || || | |||||| | || ||||| |||| |||||||||||| ||||||| ||||||||||||| || |
|
|
| T |
13204601 |
actaacacgctctccactaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctcca |
13204700 |
T |
|
| Q |
218 |
tgaaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttg |
317 |
Q |
| |
|
|||||||| || |||||||||| | ||| | | || | ||| ||||||||||||||| |||| ||||||||||| |||||||| | ||| | |
|
|
| T |
13204701 |
tgaaggtacactagcttatcaagatactcatctctcgaagga---atctgattctcctcttgtgtaggacagttatctttgatttcttgaattattttgg |
13204797 |
T |
|
| Q |
318 |
cttccacaataggatgagttgaaacaagccaaaa |
351 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
13204798 |
cttccacaataggatgagtggaaacaagccaaaa |
13204831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 13094443 - 13094768
Alignment:
| Q |
20 |
gatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggac |
119 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||| || || ||||||| ||||||||||||||||| | |||||||||||| ||||| |||| |||||| |
|
|
| T |
13094443 |
gatatccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggag |
13094542 |
T |
|
| Q |
120 |
caacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatg |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || | |||||| | || ||||| |||| ||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
13094543 |
taacatggtatccactaggtagtatatcagatttgattgcacagatatgctcaaaaggtacaggaggataaagccttaaggtttcacatatagctccatg |
13094642 |
T |
|
| Q |
220 |
aaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgct |
319 |
Q |
| |
|
||||| || |||||||||| | || | | ||| || ||| || |||||| |||||| ||||||||| ||||||||||||| | |||| || |
|
|
| T |
13094643 |
gaggtatactagcttatcaagatccacatccctcaaagta---atccgataatcctctcgtgttaaccaattatctctgatctcttgaatgattttttct |
13094739 |
T |
|
| Q |
320 |
tccacaataggatgagttgaaacaagcca |
348 |
Q |
| |
|
||||||||||||| |||||||| |||||| |
|
|
| T |
13094740 |
tccacaataggataagttgaaagaagcca |
13094768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 25 - 348
Target Start/End: Original strand, 13007249 - 13007569
Alignment:
| Q |
25 |
ccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaaca |
124 |
Q |
| |
|
|||||| ||||||||||| |||| ||| || || ||||||| ||||||||||||||||| || ||||||||||| | |||| |||| ||||||| |||| |
|
|
| T |
13007249 |
ccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaaca |
13007348 |
T |
|
| Q |
125 |
tggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggt |
224 |
Q |
| |
|
| | |||||||||||||||||| ||||| | |||||| | || ||||| |||| ||||||||||||||||| || |||||||| |||| |||| |||| |
|
|
| T |
13007349 |
cgctctccactaggtagtatatcggaattgattgcacagatatgctcaaaaggtacaggaggataaagcctcatggcttcacatagagctccatggaggt |
13007448 |
T |
|
| Q |
225 |
aaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccac |
324 |
Q |
| |
|
| || |||||||||| | || | | ||| | || ||||||||||||||| | || ||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
13007449 |
acactagcttatcaagatccacatctctcaaagga---gtctgattctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttccac |
13007545 |
T |
|
| Q |
325 |
aataggatgagttgaaacaagcca |
348 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13007546 |
aataggatgagttgaaacaagcca |
13007569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 13070326 - 13069999
Alignment:
| Q |
18 |
ctgatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttgg |
117 |
Q |
| |
|
|||||| |||||| ||||||||||| |||| ||| || || ||||||| ||||||||||||||||| || ||||||||||| | |||| |||| ||||| |
|
|
| T |
13070326 |
ctgatacccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttgg |
13070227 |
T |
|
| Q |
118 |
accaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgca |
217 |
Q |
| |
|
|| |||| | | |||||||||||||||||| || || | |||||| | || ||||| |||| |||||||||||| ||||||||||||||||||||| || |
|
|
| T |
13070226 |
actaacacgctctccactaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggtttcacatatagctcca |
13070127 |
T |
|
| Q |
218 |
tgaaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttg |
317 |
Q |
| |
|
|||||||| || || ||||||| || |||| | | || ||||||||||||||| | || |||||||| || |||||||||| ||| | |
|
|
| T |
13070126 |
tgaaggtacactagattatcaa---gatccacatctctccaaggagtctgattctcctcttgtgtgggccagttatcttttatttcttgaataattttgg |
13070030 |
T |
|
| Q |
318 |
cttccacaataggatgagttgaaacaagcca |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13070029 |
cttccacaataggatgagttgaaacaagcca |
13069999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 13161565 - 13161883
Alignment:
| Q |
20 |
gatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggac |
119 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||| || || ||||||| ||||||||||| ||||| | ||||| |||||| ||||| |||| ||||||| |
|
|
| T |
13161565 |
gatatccatctctcaggcttaaattccatgcagtcttccccccatagttgttccatcctgcccatagaatacatagagtacattaaacttgtatttggac |
13161664 |
T |
|
| Q |
120 |
caacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatg |
219 |
Q |
| |
|
|| | | | |||||||||||||||||| || || | |||||| | || ||||| |||||||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
13161665 |
taatacgttctccactaggtagtatatcggatttgattgcacagatatgctcaaaaggtataggtggataaagccttaaggtttcacatatagctccatg |
13161764 |
T |
|
| Q |
220 |
aaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgct |
319 |
Q |
| |
|
||||| || |||||||||| || | | ||| || ||| ||| |||||||||||||| ||||||||||||||||||||||| | |||| || |
|
|
| T |
13161765 |
gaggtatactagcttatcaagaaccacatccctcaaaata---atccgattatcctcttgtgttagccaattatctttgatctcttgaatgattttttct |
13161861 |
T |
|
| Q |
320 |
tccacaataggatgagttgaaa |
341 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
13161862 |
tccacaataggataagttgaaa |
13161883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 25 - 348
Target Start/End: Original strand, 13101049 - 13101369
Alignment:
| Q |
25 |
ccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaaca |
124 |
Q |
| |
|
|||||| ||||||||||| |||| ||| || || ||||||| ||||||||||||||||| || ||||||||||| | |||| |||| ||||||| || | |
|
|
| T |
13101049 |
ccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaaaa |
13101148 |
T |
|
| Q |
125 |
tggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggt |
224 |
Q |
| |
|
| | ||||||||| |||||||| || || | || ||| | || ||||| |||| |||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
13101149 |
cgctctccactaggaagtatatcggatttgattgaacatatatgctcaaaaggtacaggaggataaagcctcaaggtttcacatatagctccatggaggt |
13101248 |
T |
|
| Q |
225 |
aaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccac |
324 |
Q |
| |
|
| || |||||||||| | ||| | | || | ||| ||||||||||||||| |||| ||||||||||| |||||||| | ||| |||||||| |
|
|
| T |
13101249 |
acactagcttatcaagatactcatctctcgaagga---atctgattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccac |
13101345 |
T |
|
| Q |
325 |
aataggatgagttgaaacaagcca |
348 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
13101346 |
aataggatgagtggaaacaagcca |
13101369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 13065362 - 13065032
Alignment:
| Q |
19 |
tgatatccatctttcaggcttaaactccaagcaatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttgga |
118 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||| || || ||||||| | |||||||||||||||| ||||||| |||||| || | |||| |||||| |
|
|
| T |
13065362 |
tgatatccatctctcaggcttaaattccatgcagtcttctccccatattttctccatccttcccattgaatacaaatagtataatatccttgtatttgga |
13065263 |
T |
|
| Q |
119 |
ccaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcat |
218 |
Q |
| |
|
| |||||| ||||||||| |||||||||| || | |||| |||| || || | |||| ||||||||||||||| |||| ||||||||||||| | | |
|
|
| T |
13065262 |
cttacatggactccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgt |
13065163 |
T |
|
| Q |
219 |
gaaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgc |
318 |
Q |
| |
|
| ||||||| || ||||||| ||||| ||| || || || ||||| || || || | | ||||||||||||||| ||||||||||||| || || |
|
|
| T |
13065162 |
ggaggtaaattagtttatcaagcttttccacaattgaagta---atcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggc |
13065066 |
T |
|
| Q |
319 |
ttccacaataggatgagttgaaacaagccaaaag |
352 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| |
|
|
| T |
13065065 |
ttccacaacaggatgacatgaaacaagccaaaag |
13065032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 12963797 - 12963727
Alignment:
| Q |
282 |
ttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaag |
352 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
12963797 |
ttagaaaattatctttaatctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaag |
12963727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 19727443 - 19727525
Alignment:
| Q |
269 |
ttctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaa |
351 |
Q |
| |
|
|||||||||||||| | || ||||||||||| |||||||||| ||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
19727443 |
ttctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaacaagccaaaa |
19727525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 13214132 - 13214188
Alignment:
| Q |
292 |
atctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagcca |
348 |
Q |
| |
|
|||||| || |||||||||| ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
13214132 |
atcttttatttcttgaataattttagcttccacaataagatgagttgaaacaagcca |
13214188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 31396580 - 31396506
Alignment:
| Q |
267 |
aattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaa |
341 |
Q |
| |
|
||||||| | ||| ||| |||| ||||||| ||||||||||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
31396580 |
aattctcatgttgggtttgacagttatcttgaatctcttgaataattttggcttccacattaggatgagttgaaa |
31396506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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