View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20006_low_4 (Length: 318)
Name: NF20006_low_4
Description: NF20006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20006_low_4 |
 | |
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| [»] chr1 (18 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 13271660 - 13271962
Alignment:
| Q |
16 |
caatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcag |
115 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13271660 |
caatcaccaccccatacatgttccattcttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcag |
13271759 |
T |
|
| Q |
116 |
aattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13271760 |
aattaactgcacacttgtgatcaaatggtataggaggataaagtctcaaggtttcacatatagctgcatgaaggtaaatcagcttatcaatgttttcaac |
13271859 |
T |
|
| Q |
216 |
atttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13271860 |
atttaaattattgatcaaattctcctcttgtgttagacaatgatctttgatctcttgaataagttttgcttccacattaggatgagttgaaacaagccaa |
13271959 |
T |
|
| Q |
316 |
aag |
318 |
Q |
| |
|
||| |
|
|
| T |
13271960 |
aag |
13271962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 13244639 - 13244337
Alignment:
| Q |
16 |
caatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcag |
115 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||||||||||||||||| ||||| |||||||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
13244639 |
caatcatctccccatatttgttgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcag |
13244540 |
T |
|
| Q |
116 |
aattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaac |
215 |
Q |
| |
|
| || | || |||||||| | ||||| | ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
13244539 |
atttgatagcgcacttgtgctgaaatgccagaggaggatatagcctcaaggtttcacatatggctccatgaaggtaaacaagcttatcaatcttttccac |
13244440 |
T |
|
| Q |
216 |
atttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaa |
315 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
13244439 |
gtttaaattattgattaaattctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccccaataggatgagttgaaacaagccaa |
13244340 |
T |
|
| Q |
316 |
aag |
318 |
Q |
| |
|
||| |
|
|
| T |
13244339 |
aag |
13244337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 19279286 - 19278984
Alignment:
| Q |
16 |
caatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcag |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||||||| | |
|
|
| T |
19279286 |
caatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttagactaacatggtctccactaggtagtatatcgg |
19279187 |
T |
|
| Q |
116 |
aattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaac |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| ||||||||||| |||| ||||||||||||| ||||||| ||||| |||||||||| | || || |
|
|
| T |
19279186 |
aattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcacatatagctccatgaagataaactagcttatcaagctctttcac |
19279087 |
T |
|
| Q |
216 |
atttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaa |
315 |
Q |
| |
|
| | ||||| |||||||||| ||||||| ||||| ||| ||| | |||||||||||||||| ||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
19279086 |
actaaaatttgtgatcaaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaa |
19278987 |
T |
|
| Q |
316 |
aag |
318 |
Q |
| |
|
||| |
|
|
| T |
19278986 |
aag |
19278984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 24 - 315
Target Start/End: Original strand, 13086189 - 13086480
Alignment:
| Q |
24 |
accccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaact |
123 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||| ||||| | |||||||||||||||||||| || | | |
|
|
| T |
13086189 |
accccatatttgtttcatccttcccattgcatacaaagagtatattaacttagtatttggtttaacataatctccactaggtagtatatcagctttgatt |
13086288 |
T |
|
| Q |
124 |
gcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaacatttaaat |
223 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||||||||| | ||||||||||||| |||||||||| || || |||| || |||||||| |||||| |
|
|
| T |
13086289 |
gcacacttgtgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctccatgaaggtacactagtttattaagcttttcaactcttaaat |
13086388 |
T |
|
| Q |
224 |
tattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaa |
315 |
Q |
| |
|
|| ||| |||||| ||||| |||| ||||||||||||||| ||||||||||| | ||| |||||||| || ||||||||||||||||||| |
|
|
| T |
13086389 |
tagtgaccaaattatcctcatgtgatagacaattatcttttatctcttgaattattttagcttccactatgaaatgagttgaaacaagccaa |
13086480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 12963993 - 12963804
Alignment:
| Q |
16 |
caatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcag |
115 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||| ||||||||||| |||||| | |
|
|
| T |
12963993 |
caatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggactaacatggtctccactaggtaatatatctg |
12963894 |
T |
|
| Q |
116 |
aattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaa |
205 |
Q |
| |
|
| |||| |||||||||||| |||||||||||||||||||||||||| || | |||||| |||||| ||||||| |||||||||||||||| |
|
|
| T |
12963893 |
atttaattgcacacttgtgttcaaatggtataggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagcttatcaa |
12963804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 13080983 - 13080682
Alignment:
| Q |
16 |
caatcatcaccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcag |
115 |
Q |
| |
|
||||| || ||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||| ||| |||| | |
|
|
| T |
13080983 |
caatcctctccccatatttgctccatccttcccattgcatacaaagaatatattaactttgtatttggactaacatggtctccactaggaagtttatccg |
13080884 |
T |
|
| Q |
116 |
aattaactgcacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaac |
215 |
Q |
| |
|
| || | ||||||||||| | ||||| || || |||||| ||||| |||| ||||||||| ||| ||||||||||||| |||||||||| | ||| || |
|
|
| T |
13080883 |
atttgatagcacacttgtgctgaaatgctacagaaggatatagccttaaggcttcacatatggctccatgaaggtaaactagcttatcaagctcttccac |
13080784 |
T |
|
| Q |
216 |
atttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaa |
315 |
Q |
| |
|
| ||||||| ||| |||||||| || ||| ||| |||||||||||||||||||||||||| ||| | || || ||||||| |||||||| |||||| |
|
|
| T |
13080783 |
acctaaattagcgataaaattctcatcgtgttttaaacaattatctttgatctcttgaataattttaccatctaccctaggatgcgttgaaaccagccaa |
13080684 |
T |
|
| Q |
316 |
aa |
317 |
Q |
| |
|
|| |
|
|
| T |
13080683 |
aa |
13080682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 36 - 314
Target Start/End: Complemental strand, 30368206 - 30367931
Alignment:
| Q |
36 |
ttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactgcacacttgtga |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| || ||||||| ||||| | ||||||||||||||||||||| || | ||||| | | |
|
|
| T |
30368206 |
ttccatccttcccatagcatacaaagagtaaattaacttggtatttggactaacattctctccactaggtagtatatcagatttgattgcactgataagc |
30368107 |
T |
|
| Q |
136 |
tcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaac-atttaaattattgatcaaa |
234 |
Q |
| |
|
||||| |||| || |||||| | ||||| || ||||||||||||| |||| ||||| || |||||||||| | |||| || ||| || |||| | || |
|
|
| T |
30368106 |
tcaaaaggtacagtaggatacaacctcatggattcacatatagctccatggaggtagactagcttatcaaggctttccaccattgaagttat----ccaa |
30368011 |
T |
|
| Q |
235 |
ttctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagcca |
314 |
Q |
| |
|
||||| | || || || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30368010 |
ttctcatgttttgatacacaattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagcca |
30367931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 13129911 - 13130197
Alignment:
| Q |
25 |
ccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactg |
124 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||||||| || || |||| ||||||| |||||||| ||||||||||||||||||||| || | || |
|
|
| T |
13129911 |
ccccatatttgttccatccttcccatagaatacaaagagtaaatcaaagttgtatttggactaacatggtatccactaggtagtatatcagatttgattg |
13130010 |
T |
|
| Q |
125 |
cacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaacatttaaatt |
224 |
Q |
| |
|
||| | || ||||| |||||||||||||||||||| |||||||||||||||||| |||| ||||| || |||||||||| | || | ||| | |
|
|
| T |
13130011 |
aacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaagatccacatgcctcaaagt |
13130110 |
T |
|
| Q |
225 |
attgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagcca |
314 |
Q |
| |
|
| ||| ||| |||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
13130111 |
a---atccgattaccctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagcca |
13130197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 317
Target Start/End: Original strand, 13204542 - 13204831
Alignment:
| Q |
25 |
ccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactg |
124 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||| | |||| |||| ||||||| |||| | | |||||||||||||||||| || || | || |
|
|
| T |
13204542 |
ccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggtagtatatcggatttgattg |
13204641 |
T |
|
| Q |
125 |
cacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaacatttaaatt |
224 |
Q |
| |
|
|||| | || ||||| |||| |||||||||||| ||||||| ||||||||||||| |||||||||| || |||||||||| | ||| | | || |
|
|
| T |
13204642 |
cacatatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatgaaggtacactagcttatcaagatactcatctctcgaagg |
13204741 |
T |
|
| Q |
225 |
attgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaa |
317 |
Q |
| |
|
| ||| ||||||||||||||| |||| ||||||||||| |||||||| | ||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
13204742 |
a---atctgattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccaaaa |
13204831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 13094482 - 13094768
Alignment:
| Q |
25 |
ccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactg |
124 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||||||| ||||| |||| |||||| |||||||| ||||||||||||||||||||| || | || |
|
|
| T |
13094482 |
ccccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggagtaacatggtatccactaggtagtatatcagatttgattg |
13094581 |
T |
|
| Q |
125 |
cacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaacatttaaatt |
224 |
Q |
| |
|
|||| | || ||||| |||| ||||||||||||||| |||||||||||||||||| |||| ||||| || |||||||||| | || | | ||| | |
|
|
| T |
13094582 |
cacagatatgctcaaaaggtacaggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagt |
13094681 |
T |
|
| Q |
225 |
attgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagcca |
314 |
Q |
| |
|
| ||| || |||||| |||||| ||||||||| ||||||||||||| | |||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
13094682 |
a---atccgataatcctctcgtgttaaccaattatctctgatctcttgaatgattttttcttccacaataggataagttgaaagaagcca |
13094768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 13007283 - 13007569
Alignment:
| Q |
25 |
ccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactg |
124 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||| | |||| |||| ||||||| |||| | | |||||||||||||||||| ||||| | || |
|
|
| T |
13007283 |
ccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggtagtatatcggaattgattg |
13007382 |
T |
|
| Q |
125 |
cacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaacatttaaatt |
224 |
Q |
| |
|
|||| | || ||||| |||| ||||||||||||||||| || |||||||| |||| |||| ||||| || |||||||||| | || | | ||| |
|
|
| T |
13007383 |
cacagatatgctcaaaaggtacaggaggataaagcctcatggcttcacatagagctccatggaggtacactagcttatcaagatccacatctctcaaagg |
13007482 |
T |
|
| Q |
225 |
attgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagcca |
314 |
Q |
| |
|
| || ||||||||||||||| | || ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13007483 |
a---gtctgattctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttccacaataggatgagttgaaacaagcca |
13007569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 314
Target Start/End: Complemental strand, 13070285 - 13069999
Alignment:
| Q |
25 |
ccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactg |
124 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||| | |||| |||| ||||||| |||| | | |||||||||||||||||| || || | || |
|
|
| T |
13070285 |
ccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggtagtatatcggatttgattg |
13070186 |
T |
|
| Q |
125 |
cacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaacatttaaatt |
224 |
Q |
| |
|
|||| | || ||||| |||| |||||||||||| ||||||||||||||||||||| |||||||||| || || ||||||| || |||| | |
|
|
| T |
13070185 |
cacatatatgctcaaaaggtacaggaggataaagtctcaaggtttcacatatagctccatgaaggtacactagattatcaa---gatccacatctctcca |
13070089 |
T |
|
| Q |
225 |
attgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagcca |
314 |
Q |
| |
|
| || ||||||||||||||| | || |||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13070088 |
aggagtctgattctcctcttgtgtgggccagttatcttttatttcttgaataattttggcttccacaataggatgagttgaaacaagcca |
13069999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 13101083 - 13101369
Alignment:
| Q |
25 |
ccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactg |
124 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||| | |||| |||| ||||||| || | | | ||||||||| |||||||| || || | || |
|
|
| T |
13101083 |
ccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaaaacgctctccactaggaagtatatcggatttgattg |
13101182 |
T |
|
| Q |
125 |
cacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaacatttaaatt |
224 |
Q |
| |
|
||| | || ||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||| || |||||||||| | ||| | | || |
|
|
| T |
13101183 |
aacatatatgctcaaaaggtacaggaggataaagcctcaaggtttcacatatagctccatggaggtacactagcttatcaagatactcatctctcgaagg |
13101282 |
T |
|
| Q |
225 |
attgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagcca |
314 |
Q |
| |
|
| ||| ||||||||||||||| |||| ||||||||||| |||||||| | ||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
13101283 |
a---atctgattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagcca |
13101369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 307
Target Start/End: Original strand, 13161604 - 13161883
Alignment:
| Q |
25 |
ccccatacatgttccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactg |
124 |
Q |
| |
|
||||||| ||||||||||| ||||| | ||||| |||||| ||||| |||| ||||||| || | | | |||||||||||||||||| || || | || |
|
|
| T |
13161604 |
ccccatagttgttccatcctgcccatagaatacatagagtacattaaacttgtatttggactaatacgttctccactaggtagtatatcggatttgattg |
13161703 |
T |
|
| Q |
125 |
cacacttgtgatcaaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaacatttaaatt |
224 |
Q |
| |
|
|||| | || ||||| |||||||| ||||||||||| |||||||||||||||||| |||| ||||| || |||||||||| || | | ||| | |
|
|
| T |
13161704 |
cacagatatgctcaaaaggtataggtggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaagaaccacatccctcaaaat |
13161803 |
T |
|
| Q |
225 |
attgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaa |
307 |
Q |
| |
|
| ||| ||| |||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||| |||||||| |
|
|
| T |
13161804 |
a---atccgattatcctcttgtgttagccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaa |
13161883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 318
Target Start/End: Complemental strand, 13065310 - 13065032
Alignment:
| Q |
37 |
tccatccttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgat |
136 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| || | |||| ||||||| |||||| ||||||||| |||||||||| || | |||| |||| || | |
|
|
| T |
13065310 |
tccatccttcccattgaatacaaatagtataatatccttgtatttggacttacatggactccactaggaagtatatcagctttgattgcaaacttttgct |
13065211 |
T |
|
| Q |
137 |
caaatggtataggaggataaagcctcaaggtttcacatatagctgcatgaaggtaaacaagcttatcaatgttttcaacatttaaattattgatcaaatt |
236 |
Q |
| |
|
| | |||| ||||||||||||||| |||| ||||||||||||| | || ||||||| || ||||||| ||||| ||| || || || ||||| || |
|
|
| T |
13065210 |
cgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaattagtttatcaagcttttccacaattgaagta---atcaagtt |
13065114 |
T |
|
| Q |
237 |
ctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaag |
318 |
Q |
| |
|
|| || | | ||||||||||||||| ||||||||||||| || |||||||||| ||||||| |||||||||||||||| |
|
|
| T |
13065113 |
ttcatcatcagatagacaattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaag |
13065032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 12963797 - 12963727
Alignment:
| Q |
248 |
ttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaag |
318 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
12963797 |
ttagaaaattatctttaatctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaag |
12963727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 19727443 - 19727525
Alignment:
| Q |
235 |
ttctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaa |
317 |
Q |
| |
|
|||||||||||||| | || ||||||||||| |||||||||| ||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
19727443 |
ttctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaacaagccaaaa |
19727525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 13214132 - 13214188
Alignment:
| Q |
258 |
atctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagcca |
314 |
Q |
| |
|
|||||| || |||||||||| ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
13214132 |
atcttttatttcttgaataattttagcttccacaataagatgagttgaaacaagcca |
13214188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 31396580 - 31396506
Alignment:
| Q |
233 |
aattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaa |
307 |
Q |
| |
|
||||||| | ||| ||| |||| ||||||| ||||||||||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
31396580 |
aattctcatgttgggtttgacagttatcttgaatctcttgaataattttggcttccacattaggatgagttgaaa |
31396506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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