View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20007_low_3 (Length: 334)
Name: NF20007_low_3
Description: NF20007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20007_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 21008783 - 21009085
Alignment:
| Q |
16 |
cattaatgactgtccgatattgatcggaagaaccagaaaaaacagtttagttattattttttaattcctaaaataccaggctttaatgagaaccatctca |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21008783 |
cattaatgactgtccgatattgatcagaagaaccagaaaaaacagtttagttattattttttaattcctaaaataccaggctttaatgagaaccgtctca |
21008882 |
T |
|
| Q |
116 |
tcttgatcgaccggtcatggaagcatgactgcgtgactgcatcgtcttattgactgtgtgattgataaaatttaagtcagctgatttcactatacaaaag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21008883 |
tcttgatcgaccggtcatggaagcatgactgcgtgactgcatcgtcttattgactgtgtgattgataaaatttaagtcagctgatgtcactatacaaaat |
21008982 |
T |
|
| Q |
216 |
atgcatatttaataataaattatcgcgcacgtgatcaaacatgcacacacattgaatacgagacacattgattaaattcattagttcacatctgacctac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21008983 |
atgcatatttaataataaattatcgcgcacttgat----------cacacattgaatacgagacacattgattaaattcattagttcacatctgacctac |
21009072 |
T |
|
| Q |
316 |
agttttcttctct |
328 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21009073 |
agttttcttctct |
21009085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 20952408 - 20952562
Alignment:
| Q |
16 |
cattaatgactgtccgatattgatcggaagaaccagaaaaaacagtttagttattattttttaattcctaaaataccaggctttaatgagaaccatctca |
115 |
Q |
| |
|
|||||||||| |||| || ||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||| || ||||||||||||||| |||| |
|
|
| T |
20952408 |
cattaatgaccgtccaatcttgatcggatgaaccagagaaaacagtttagttattattctttaattcttaaaata-caagctttaatgagaaccgactca |
20952506 |
T |
|
| Q |
116 |
tcttgatcgaccggtcatggaagcatgactgcgtgactgcatcgtcttattgactg |
171 |
Q |
| |
|
|||||||| | |||||| ||||| |||||| ||| || || || |||||||||||| |
|
|
| T |
20952507 |
tcttgatctaacggtcacggaagaatgactacgttaccgcgtcatcttattgactg |
20952562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 52237996 - 52237887
Alignment:
| Q |
63 |
tagttattattttttaattcctaaaata-ccaggctttaatgagaaccatctcatcttgatcgaccggtcatggaagcatgactgcgtgactgcatcgtc |
161 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||||| || || || ||||| ||||||| ||||||| | ||||||| ||| || || |
|
|
| T |
52237996 |
tagttattattttgtaattcctaaaatattgagcttttaatgagaaccgactaatttttatcgaacggtcattgaagcataattgcgtgaatgcttcatc |
52237897 |
T |
|
| Q |
162 |
ttattgactg |
171 |
Q |
| |
|
|||||||||| |
|
|
| T |
52237896 |
ttattgactg |
52237887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University