View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20007_low_4 (Length: 250)
Name: NF20007_low_4
Description: NF20007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20007_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 21009159 - 21009397
Alignment:
| Q |
1 |
tagacaagtttcttccctgcctcctttttaaattcaaactcgcaaacatttaatgctccaaaataacaaaattaacttaagggcaataatgtggtggcat |
100 |
Q |
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| T |
21009159 |
tagacaagtttcttccctgcctcctttttaaattcaaactcgtgaacatttaatgctccaaaataacaaaattaacttaagggcaataatgcggtggcat |
21009258 |
T |
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| Q |
101 |
gaggtctcacaggggttggtgttttgaaacaaaagggggctgccattgttgctagctgctgcgtacatatttgacaaagcaatatgaattccatgattat |
200 |
Q |
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| T |
21009259 |
gaggtctcacaggggttggtgttttgacacaaaagggggctgccattgttgctagctgctgcgtacatatttgacaaagcaatatgaattccgtgattat |
21009358 |
T |
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| Q |
201 |
caggtctagagtaagaatgcatttcaccactctttcatc |
239 |
Q |
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| T |
21009359 |
caggtctagagtaagaatgcatttcaccactctttcatc |
21009397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 38183029 - 38183069
Alignment:
| Q |
160 |
tgcgtacatatttgacaaagcaatatgaattccatgattat |
200 |
Q |
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| T |
38183029 |
tgcgtacatatttgacaaagcaacatgagctccatgattat |
38183069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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