View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20007_low_5 (Length: 250)
Name: NF20007_low_5
Description: NF20007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20007_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 33715142 - 33715376
Alignment:
| Q |
16 |
ataaaaggcgttgaagggttccggtgggagtggaggtgtgctttgctatttgaatattaacatgaaaatcatattctacttnnnnnnnngtaatgctatg |
115 |
Q |
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| T |
33715142 |
ataaaaggcgttggagggttccggtgagagtggaggtgtgcttttctatttgaatattaacatgaaaatcatattctacttaaaaaaaagtaatgctatg |
33715241 |
T |
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| Q |
116 |
ataaccgacgagattaaaacccaataaaaatacgaatatgggtcacgtttgtatttgtctttccaccggtaataataaaatatagtaggtgtagatgact |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33715242 |
ataaccgacgagattaaaacccaataaaaatacgaatatgggtcacgtttgtatttgtctttccaccggtaataataaaatatagtaggtgtagatggct |
33715341 |
T |
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| Q |
216 |
tggatatagctatcaaaattggatttcgtgtagtc |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
33715342 |
tggatatagctatcaaaattggatttcgtgtagtc |
33715376 |
T |
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