View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20007_low_8 (Length: 234)
Name: NF20007_low_8
Description: NF20007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20007_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 17259487 - 17259694
Alignment:
| Q |
1 |
ataaacacatatatcgattattcaattatgaagaatcgtatccaataatccaa------tacaacaaataattctcgataaacgatgatccattaaaaca |
94 |
Q |
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| T |
17259487 |
ataaacacatatatcgattattcaattatgaagaatcatatccaataatccaaaaactatacaacaaataattctcgataaacgatgatccatcaaaaca |
17259586 |
T |
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| Q |
95 |
agtgttaaattcttgaaatctaaaatccgaaaaacgcaaatccatatcgatcgatcgattaacatgcaaaactttagaatcgagaaatcaaaatcatgaa |
194 |
Q |
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| T |
17259587 |
agtgtgaaattcttcatatcttaaatccgaaaaacgcaaatccatatcgatcgatcgatcaacacgcaaaactttataatcgagaaatcaaaatcatgaa |
17259686 |
T |
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| Q |
195 |
tcaaaagt |
202 |
Q |
| |
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|||||||| |
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| T |
17259687 |
tcaaaagt |
17259694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 17312117 - 17312351
Alignment:
| Q |
1 |
ataaacacatatatcgatt-attcaattatgaagaatcgtatccaataatccaataca---acaaataattctcgataaacgatgatccattaaaacaag |
96 |
Q |
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| T |
17312117 |
ataaacacatgtatcgatttattcaattatgaagaactacatccaataattcaaaaactatacaaataattctcgataaacgatgatccat-aaaagaag |
17312215 |
T |
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| Q |
97 |
tgttaaattcttgaaatctaa--aatccgaaaaacgcaaatccatatcgatcgatcgattaa--------------catgcaaaactttagaatcgagaa |
180 |
Q |
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| T |
17312216 |
tgtgaaattcttcatatctatgcaatccgataaacgcaaatccatatcgatcgatcaaagaaatctgaacaacgaacatgcaaaactttagaatcgagaa |
17312315 |
T |
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| Q |
181 |
atcaaaatcatgaatcaaaagttgaacagaaaagaaga |
218 |
Q |
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| T |
17312316 |
atcaaaatcatgaatcaaa--ttgaacagaaaagaaga |
17312351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 17335377 - 17335613
Alignment:
| Q |
1 |
ataaacacatatatcgatt-attcaattatgaagaatcgtatccaataatccaata------caacaaataattctcgataaacgatgatccattaaaac |
93 |
Q |
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|||||||||| |||||||| |||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||| |||| |
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| T |
17335377 |
ataaacacatgtatcgatttattcaattatgaagaactacatccaataattcaaaaactacacaacaaataattctcgataaacgatgatccataaaaa- |
17335475 |
T |
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| Q |
94 |
aagtgttaaattcttgaaatctaa--aatccgaaaaacgcaaatccatatcgatcgatcgattaa--------------catgcaaaactttagaatcga |
177 |
Q |
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| T |
17335476 |
-agtgtgaaattcttcatatctatgcaatccgataaacgcaaatccatatctatcgatcaaagaagtctgaacaacgaacatgcaaatctttagaatcga |
17335574 |
T |
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| Q |
178 |
gaaatcaaaatcatgaatcaaaagttgaacagaaaagaaga |
218 |
Q |
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| T |
17335575 |
gaaatcaaaatcatgaatcaaa--ttgaacagaaaagaaga |
17335613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 17259694 - 17259746
Alignment:
| Q |
169 |
tagaatcgagaaatcaaaatcatgaatcaaaagttgaacagaaaagaagaaga |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17259694 |
tagaatcgagaaatcaaaatcatgaatcaaaagttgaacagaaaagaagaaga |
17259746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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