View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_high_1 (Length: 826)
Name: NF20008_high_1
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 376
Target Start/End: Original strand, 45892432 - 45892809
Alignment:
| Q |
6 |
cagagaagatataattgtaaggaaatcctacttgcaccacgagctgcaagtcgataaaataacagacataaaagaacatgagcatccattgttttcaatg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45892432 |
cagagaagatataattgtaaggaaatcctacttgcaccacgagctgcaagtcgataaaataacagacataaaagaacatgagcatccattgttttcaatg |
45892531 |
T |
|
| Q |
106 |
tactcaataaaccatgtcctgaaagaatgagaagtgttggttcatgcctgagtcacatagccgacaataaatatggagaagccgactgttgttgccgacg |
205 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45892532 |
tactcaataaaccttgtcctgaaagaatgagaagtgttggttcatgcctgagtcacatagccgacaataaatatggagaagccgactgttgttgccgacg |
45892631 |
T |
|
| Q |
206 |
atgattttccaataaaagccgataacatgaaggccaacccagtctaaaacaaaaggagaaaatactaggaatcagaaaaaatcttcagattc-------a |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45892632 |
atgattttccaataaaagccgataacatgaaggccaacccagtctaaaacaaaaggagaaaatactaggaatcagaaaaaatcttcagattcacagaata |
45892731 |
T |
|
| Q |
299 |
cagaatagacccaaatgnnnnnnncagaaagtataaattgtaaagctagaagattctcaccatgttaaattcaaatag |
376 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45892732 |
cagaatagacccaaatgaaaaaaacagaaagtataaattgtaaagctagaagattctcaccatgttaaattcaaatag |
45892809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 611 - 826
Target Start/End: Original strand, 45893044 - 45893259
Alignment:
| Q |
611 |
tcatcattgtcaaattttacagtaggagaaaattaatgcaaaaaacccccactgtaattcctattgatcttagtattctccaatgaactaatgtgtacta |
710 |
Q |
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| T |
45893044 |
tcatcattgtcaaattttacagtaggagaaaattaatgcaaaaaacccccactgtaattcctattgatcttagtattctccaatgaactaatgtgtacta |
45893143 |
T |
|
| Q |
711 |
attcctattaatcttagtactactatatgactgcaccatacctggcgaagtttgagctctttctctgcgaccaaagaactcatctgaagaacaaaattaa |
810 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45893144 |
attcctattaatcttagtactactatatgactgcaccatacctggcgaagtttgagctctttctctgcgaccaaagaactcatctgaagaacaaaattaa |
45893243 |
T |
|
| Q |
811 |
acatagcaattgcaag |
826 |
Q |
| |
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|||||||||||||||| |
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| T |
45893244 |
acatagcaattgcaag |
45893259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 58 - 376
Target Start/End: Complemental strand, 12981523 - 12981200
Alignment:
| Q |
58 |
gataaaataacagacataaaagaacatgagcatccattgttttcaatgtactcaataaaccatgtcctgaaagaatgagaagtgttg-gttcatgcctga |
156 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||||||| ||| | ||||||||||||||| |||| ||||| |||||||||| || |||||||||||| |
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| T |
12981523 |
gataaaataacagatataaaagaacataagcatccattgatttga-tgtactcaataaaccttgtcatgaaacaatgagaagtattttgttcatgcctga |
12981425 |
T |
|
| Q |
157 |
gtcacatagccgacaataaatatggagaagccgactgttgttgccgacgatgattttccaataaaagccgataacatgaaggccaacccagtctaaaaca |
256 |
Q |
| |
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|||| ||||||||||||||| ||| |||||||||||||||||||| |||||||| | ||| ||||| ||||||| |||||| |||||||||||||||| |
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| T |
12981424 |
gtcatgaagccgacaataaatacggaaaagccgactgttgttgccgaagatgatttacgaatgaaagctgataacaagaaggcaaacccagtctaaaaca |
12981325 |
T |
|
| Q |
257 |
aaaggagaaaatactaggaatcagaaaaa--atc---ttcagat-tcacagaatagacccaaatgnnnnnnncagaaagtataaattgtaaagctagaag |
350 |
Q |
| |
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|||||||||||||||||| |||||||||| ||| |||| || |||||| ||||||| ||| |||||||||||||| ||||||||||||| |
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| T |
12981324 |
aaaggagaaaatactaggcatcagaaaaaccatcaaattcacataatacagaacagacccagatg-aaaagacagaaagtataaatggtaaagctagaag |
12981226 |
T |
|
| Q |
351 |
attctcaccatgttaaattcaaatag |
376 |
Q |
| |
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|||||||||||| | | ||||||||| |
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| T |
12981225 |
attctcaccatgctgagttcaaatag |
12981200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 436 - 550
Target Start/End: Original strand, 45892869 - 45892983
Alignment:
| Q |
436 |
tcatgccacagagaactacgagaatagatgataggagtgtaacaactgtttcccaggttagccatgataaccagtatgcagagtcgtaaagccccatcac |
535 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45892869 |
tcatgccacagagaactacgagaatagatgataggagtgtaacaactgtttcccaggttagccatgataaccagtatgcagagtcgtaaagccccatcac |
45892968 |
T |
|
| Q |
536 |
tgtcattgcctatcg |
550 |
Q |
| |
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||||||||||||||| |
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| T |
45892969 |
tgtcattgcctatcg |
45892983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 437 - 549
Target Start/End: Complemental strand, 12981139 - 12981027
Alignment:
| Q |
437 |
catgccacagagaactacgagaatagatgataggagtgtaacaactgtttcccaggttagccatgataaccagtatgcagagtcgtaaagccccatcact |
536 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12981139 |
catgccagtgagaactaagagaagagatgatatgattgtaacaactgtttcccaggttagccatgataaccagtatgcagagtcgtaaagccccatcacg |
12981040 |
T |
|
| Q |
537 |
gtcattgcctatc |
549 |
Q |
| |
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||||||||||||| |
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| T |
12981039 |
gtcattgcctatc |
12981027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 745 - 826
Target Start/End: Complemental strand, 12980581 - 12980500
Alignment:
| Q |
745 |
accatacctggcgaagtttgagctctttctctgcgaccaaagaactcatctgaagaacaaaattaaacatagcaattgcaag |
826 |
Q |
| |
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||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
12980581 |
accatacctggcgaagtttaagctctttctctgtcaccaatgaactcatctgaagaacgaaattaaacatagcagttgcaag |
12980500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 20273365 - 20273546
Alignment:
| Q |
6 |
cagagaagatataattgtaaggaaatcctacttgcaccacgagctgcaagtcgataaaataacagacataaaagaacatgagcatccattgttttcaatg |
105 |
Q |
| |
|
|||||||||||| |||||||||||||| | || |||| ||||||||| || ||||||| ||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
20273365 |
cagagaagatatttgtgtaaggaaatcctgcgtgtaccatgagctgcaaatcaataaaattgaagacaaaaaagaacacgagcatccattgttttcaatg |
20273464 |
T |
|
| Q |
106 |
tactcaataaaccatgtcctgaaagaatgagaagtgttggttcatgcctgagtcacatagccgacaataaatatggagaagc |
187 |
Q |
| |
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|| |||||||||| |||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |
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| T |
20273465 |
taatcaataaaccttgtcctgaaagactgagaagtgttggttcatgcatgagtcacaaagccgataataaatatggagaagc |
20273546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 20273553 - 20273592
Alignment:
| Q |
224 |
ccgataacatgaaggccaacccagtctaaaacaaaaggag |
263 |
Q |
| |
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||||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
20273553 |
ccgataacatgaaggccaacctagtctataacaaaaggag |
20273592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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