View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20008_high_21 (Length: 306)

Name: NF20008_high_21
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20008_high_21
NF20008_high_21
[»] scaffold0449 (1 HSPs)
scaffold0449 (1-289)||(3394-3682)


Alignment Details
Target: scaffold0449 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 3394 - 3682
Alignment:
Q  1 tcaaagtaagttgactatatattgtagtttgaaccacattactctttctagtaaactagtaaccatagttggttcaatcatccataacctcataaatgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3394 tcaaagtaagttgactatatattgtagtttgaaccacattactctttctagtaaactagtaaccatagttggttcaatcatccataacctcataaatgtc 3493  T
Q  101 tacctcaagctaaagcaacattttagaactaatttatatcatcaagaaaatttaaaagcaattgtaactacttaattgtttgcagacaagcgtttcaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3494 tacctcaagctaaagcaacattttagaactaatttatatcatcaagaaaatttaaaagcaattgtaactacttaattgtttgcagacaagcgtttcaatg 3593  T
Q  201 aaatcaaataataacactataataattttaaactaaaacaatgcaaataccatcatgattaattaaacattactactaaatattagtaa 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3594 aaatcaaataataacactataataattttaaactaaaacaatgcaaataccatcatgattaattaaacattactactaaatattagtaa 3682  T

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