View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_high_26 (Length: 244)
Name: NF20008_high_26
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 6445996 - 6446226
Alignment:
| Q |
1 |
ttgacatgttataattttgtgaaaaaattcattttatagatgcaccatgattatcaannnnnnnnnnnnnntatatagttagttcttattcatttttcag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6445996 |
ttgacatgttataattttgtgaaaaaattcattttatagatgcaccatgattatcaattttttttaaaaa-tatatagttagttcttattcatttttcag |
6446094 |
T |
|
| Q |
101 |
caaaatttcgtactttcaaattacttggactgaagtgatcgtggacttaccttctgaaaaagcccaactcaataatagcatgagttgttgggtcatattc |
200 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6446095 |
caaaatttcgaactttcatattacttggactgaagtgatcgtggactcaccttctgaaaaagcccaactcaataatagcatgagttgttgggtcatattc |
6446194 |
T |
|
| Q |
201 |
acaaatagccacaagtacggaaagtggtcaca |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6446195 |
acaaatagccacaagtacggaaagtggtcaca |
6446226 |
T |
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