View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_high_3 (Length: 584)
Name: NF20008_high_3
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 44408904 - 44409318
Alignment:
| Q |
15 |
atgaagcatacattaagcaaaaagtgaaattaaataaagggtcatcttattccatcacattcagtgcagctcgcacgtgtgcacaagaagagaaacttaa |
114 |
Q |
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| T |
44408904 |
atgaagcatacattaagcaaaaagtgaaattaaataaagggtcatcttattccatcacattcagtgcagctcgcacgtgtgcacaagaagagaaacttaa |
44409003 |
T |
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| Q |
115 |
tgtgtcagtggtaccaacttctgagaaaagagattatggtatcattccaatacaaactatgtatggtagtaatggttgggaatcatttgcttgtgggttt |
214 |
Q |
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| T |
44409004 |
tgtgtcagtggtaccaacttctgagaaaagagattatggtatcattccaatacaaactatgtatggtagtaatggttgggaatcatttgcttgtgggttt |
44409103 |
T |
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| Q |
215 |
agagctgattatccagaaggggaaattgtgatccataactctggtgttgaagatgatccagcttgtggtccacttattgattctgttgctttgaaggttt |
314 |
Q |
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| T |
44409104 |
agagctgattatccagaaggggaaattgtgatccataactctggtgttgaagatgatccagcttgtggtccacttattgattctgttgctttgaaggttt |
44409203 |
T |
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| Q |
315 |
tgaacccacctataagaaccagaggtaattaattaaacggtccaatatgattgaatatttctgtaaatcaattttatgc-ttttttacatacaaataaaa |
413 |
Q |
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| T |
44409204 |
tgaacccacctataagaaccagaggtaattaattaaacggtccaatatgattgaatatttttgtaaatctattttatgctttttttacatagaaataaaa |
44409303 |
T |
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| Q |
414 |
ttcttaattaaacta |
428 |
Q |
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| T |
44409304 |
ttcttaattaaacta |
44409318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 463 - 566
Target Start/End: Original strand, 44409318 - 44409421
Alignment:
| Q |
463 |
agtttgacaattgtttttatttgtttggtgcagccaatttattgaaaaatggaaactttgaagaaggaccatatgtgttcccaaatgcatcatggggggt |
562 |
Q |
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| T |
44409318 |
agtttgacaattgtttttgtttgtttggtgtagccaatttattgaaaaatggaaactttgaagaaggaccatatgtgttcccaaatgcatcatggggggt |
44409417 |
T |
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| Q |
563 |
attg |
566 |
Q |
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|||| |
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| T |
44409418 |
attg |
44409421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 2285858 - 2285907
Alignment:
| Q |
255 |
ctggtgttgaagatgatccagcttgtggtccacttattgattctgttgct |
304 |
Q |
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| T |
2285858 |
ctggtgttgaagaagatcctgcttgtggtcctcttattgattctgttgct |
2285907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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