View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_10 (Length: 462)
Name: NF20008_low_10
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 432
Target Start/End: Complemental strand, 29724667 - 29724250
Alignment:
| Q |
15 |
gactagtttgtatatggcacattgaattagaaggagcaagttccatagttatatagtagtagtaaagtgtaaaggggacatgactcatgaatatgacatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29724667 |
gactagtttgtatatggcacattgaattagaaggagcaagttccatagttatatagtagtagtaaagtgtaaaggggacatgactcatgaatatgacatt |
29724568 |
T |
|
| Q |
115 |
agcattagtggggtggttgtggcattatgatattcaatctacaatgataatgttcatgttagaaggttcataaggagtatcccttgagtaggcatgttca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29724567 |
agcattagtggggtggttgtggcattatgatattcaatctacaatgataatgttcatgttagaaggttcataaggagtatcccttgagtaggcatgttca |
29724468 |
T |
|
| Q |
215 |
ctagacagtccaaaatgtgtataccttagtgtgccagtaaagattgtttatggacatagtagttatttataaccttagtgtgataaattcnnnnnnncta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29724467 |
ctagacagtccaaaatgtgtataccttagtgtgccagtaaagattgtttacggacatagtagttatttataaccttagtgtgataaattcaaaaaaacta |
29724368 |
T |
|
| Q |
315 |
taaataatctcctgtagttgagttgagactcccgaacgagtcagagatggagcttcatattttcatgcatcatttgtattaaaatatttacattgtcaac |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29724367 |
taaataatctcctgtagttgagttgagactcccgaacgagtcagaaaaggagcttcatattttcatgcatcatttgtattaaaatatttacattgtcaac |
29724268 |
T |
|
| Q |
415 |
atatgacaatcaatattt |
432 |
Q |
| |
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|||||||||||||||||| |
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| T |
29724267 |
atatgacaatcaatattt |
29724250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 29706454 - 29706264
Alignment:
| Q |
15 |
gactagtttgtatatggcacattgaattagaaggagcaagttccatagttatatagtagtagtaaagtgtaaaggggacatgactcatgaatatgacatt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||| |
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|
| T |
29706454 |
gactagtttgtatatggcacattgaattagaaggagcaagttccatagttatatagtagtagtaaagtgaaaaaggggcatgactcatgaatatgatatt |
29706355 |
T |
|
| Q |
115 |
agcattagtggggtggttgtggcattatgatattcaatctacaatgataatgttcatgttagaaggttcataaggagtatcccttgagtag |
205 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||| |
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| T |
29706354 |
agccctagtggggtggttgtgacattatgatattcaatctacaatgataatgtttatggtagaaggttcacaaagagtatcccttgagtag |
29706264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 29706020 - 29705947
Alignment:
| Q |
328 |
gtagttgagttgagactcccgaacgagtcagagatggagcttcatattttcatgcatcatttgtattaaaatat |
401 |
Q |
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||||||||||||| || || |||||||| ||| ||||||| ||||||||||||| ||| | ||||||||||| |
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| T |
29706020 |
gtagttgagttgaaaccccggaacgagtttaagaaggagctttatattttcatgcaccatctatattaaaatat |
29705947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 29706234 - 29706206
Alignment:
| Q |
225 |
caaaatgtgtataccttagtgtgccagta |
253 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
29706234 |
caaaatgtgtataccttagtgtgccagta |
29706206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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