View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_12 (Length: 418)
Name: NF20008_low_12
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 404
Target Start/End: Complemental strand, 26069707 - 26069316
Alignment:
| Q |
13 |
aatatacagctgcttactccttacagcagnnnnnnnngcacacaaatcatatttacaaaaacgccgtcgtttactgctaaaacagataagttcaaaaacc |
112 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26069707 |
aatatacagctgcttactccttacagcagaaaaaaa-gcacacaaatcatatttacaaaaacgccgtcgtttactgctaaaacagataagttcaaaaacc |
26069609 |
T |
|
| Q |
113 |
aaaaacagcaaattcaaacacgcttcaaagcaagtagtaacgaaaaacagttacaaacagttattctacgtgccacgtcaccatcctaacaac-tattca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26069608 |
aaaaacagcaaattcaaacacgcttcaaagcaagtagtaacgaaaaacagttacaaacagttattctacgtgccacgtcaccatcctaacaacctattca |
26069509 |
T |
|
| Q |
212 |
aaacttcgagcccaacgaacacacgctgaaattggaccccacacgtggcagccaccgaattcacacgtggttttcaatttcacctactccccatgactcg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26069508 |
aaacttcgagcccaacgaacacacgctgaaattggaccccacacgtggctgccaccgaattcacacgtggttttcaatttcacctactccccatgactcg |
26069409 |
T |
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| Q |
312 |
gaccgccgccctgacgcaaaccggttcatcgaacccaaaccggccggttcactgtgaaccgtatcttcaaccgttctactcaccgtacttcct |
404 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26069408 |
gaccgccgccctgatgcaaaccggttcatcgaacccaaaccggccggttcactgtgaaccgtatcttcaaccgttctactcaccgtacttcct |
26069316 |
T |
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