View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20008_low_13 (Length: 416)

Name: NF20008_low_13
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20008_low_13
NF20008_low_13
[»] chr5 (2 HSPs)
chr5 (13-289)||(41345575-41345851)
chr5 (356-392)||(41345478-41345514)
[»] chr7 (1 HSPs)
chr7 (25-69)||(9483384-9483428)
[»] chr8 (2 HSPs)
chr8 (39-82)||(15140368-15140411)
chr8 (31-83)||(30918778-30918830)
[»] chr4 (1 HSPs)
chr4 (24-66)||(35212745-35212787)
[»] chr3 (1 HSPs)
chr3 (25-83)||(7563199-7563257)
[»] chr2 (2 HSPs)
chr2 (17-83)||(33498620-33498686)
chr2 (33-85)||(9994743-9994795)
[»] chr6 (2 HSPs)
chr6 (30-71)||(6916737-6916778)
chr6 (33-65)||(33501985-33502017)
[»] chr1 (1 HSPs)
chr1 (29-65)||(46873779-46873815)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 41345851 - 41345575
Alignment:
Q  13 cacagacaagtcgacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgttgtatcaaacacaaacacgtgttggacacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |    
T  41345851 cacagacaagtcgacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcagtgttgtatcaaacactaacacgtgttggataac 41345752  T
Q  113 aaatacacctacaatataaagtgtctatgctatatagttcaatttcaccccttaaaattaaaactaccaagcaaaactttttcaagcatatacctggaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41345751 aaatacacctacaatataaagtgtctatgctatatagttcaatttcaccccttaaaattaaaactaccaagcaaaactttttcaagcatatacctggaac 41345652  T
Q  213 tgtctttgacttcaatctcttgtctttggcattaagatcagtaggctcagcaaatccgtcctagtacaacacaagtt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41345651 tgtctttgacttcaatctcttgtctttggcattaagatcagtaggctcagcaaatccgtcctagtacaacacaagtt 41345575  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 41345514 - 41345478
Alignment:
Q  356 ggaaccatttaattctccaattcaaacaaaatttcac 392  Q
    |||||||||||||||||||||||||||| ||||||||    
T  41345514 ggaaccatttaattctccaattcaaacacaatttcac 41345478  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 9483384 - 9483428
Alignment:
Q  25 gacaccaataatagtttgagaaaattgactaattgaatgtaacca 69  Q
    ||||||||||||| ||||||||||| || ||||||||||||||||    
T  9483384 gacaccaataataatttgagaaaatagaataattgaatgtaacca 9483428  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 15140411 - 15140368
Alignment:
Q  39 tttgagaaaattgactaattgaatgtaaccacacgagtcggtgt 82  Q
    ||||||||| |||| |||||||||||||||||||| ||||||||    
T  15140411 tttgagaaatttgaataattgaatgtaaccacacgtgtcggtgt 15140368  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 30918830 - 30918778
Alignment:
Q  31 aataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgtt 83  Q
    ||||||| ||| ||||| |||| |||||||||||||||||| | |||||||||    
T  30918830 aataataattttagaaagttgaataattgaatgtaaccacatgtgtcggtgtt 30918778  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 35212787 - 35212745
Alignment:
Q  24 cgacaccaataatagtttgagaaaattgactaattgaatgtaa 66  Q
    |||||||||||||| |||||||||||| | |||||||||||||    
T  35212787 cgacaccaataataatttgagaaaattaaataattgaatgtaa 35212745  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 7563257 - 7563199
Alignment:
Q  25 gacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgtt 83  Q
    ||||||||||||| |||||||| || || |||||||||||| | ||||| |||||||||    
T  7563257 gacaccaataataatttgagaatatggaataattgaatgtatctacacgtgtcggtgtt 7563199  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 33498620 - 33498686
Alignment:
Q  17 gacaagtcgacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgtt 83  Q
    |||| |||||||| | ||||| ||||||||||| || |||||||||||||||  ||| |||||||||    
T  33498620 gacacgtcgacacaagtaataatttgagaaaatggaataattgaatgtaacctgacgtgtcggtgtt 33498686  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 9994743 - 9994795
Alignment:
Q  33 taatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgttgt 85  Q
    |||||||||||||||||| | || |||||||| |||||| | |||||||||||    
T  9994743 taatagtttgagaaaattaaatagttgaatgtgaccacatgcgtcggtgttgt 9994795  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 6916737 - 6916778
Alignment:
Q  30 caataatagtttgagaaaattgactaattgaatgtaaccaca 71  Q
    |||||| | |||||||||||||| ||||||||||||||||||    
T  6916737 caataacaatttgagaaaattgaataattgaatgtaaccaca 6916778  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 33502017 - 33501985
Alignment:
Q  33 taatagtttgagaaaattgactaattgaatgta 65  Q
    |||||||||||||||||||| ||||||||||||    
T  33502017 taatagtttgagaaaattgaataattgaatgta 33501985  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 46873779 - 46873815
Alignment:
Q  29 ccaataatagtttgagaaaattgactaattgaatgta 65  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  46873779 ccaataatagtttgataaaatggactaattgaatgta 46873815  T

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