View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_14 (Length: 403)
Name: NF20008_low_14
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 24925671 - 24925308
Alignment:
| Q |
8 |
gagcacagacattagcccaattcttttgacccaacaacaacatatcatcaacaaattgaaagtgtgatacaaccatcgaattgtccatacccactgagta |
107 |
Q |
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| T |
24925671 |
gagcacggacattagcccaattcttttgacccaacaacaacatatcatcaataaattgaaggtgtcatacaaccatcgaattgtccatacccactgagta |
24925572 |
T |
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| Q |
108 |
cacatgaaacagataattttcaaccattaattttcaaccattgctttcatcaaaatgtttagtcccttggccgcaatcaaaaataaaaaggggaaagtgg |
207 |
Q |
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| T |
24925571 |
cacatgaaacagataattttcaaccatt--------------gcttttatcaaaatgtttagtcccttggccgcaatcaaaaataaaaaggggaaagtgg |
24925486 |
T |
|
| Q |
208 |
atcgtattgctaatgttgttcagaaaagattacacattacacaaacaagaaatagctggatgtaattaaagtacttcaaacaagnnnnnnnnnnnnnnnn |
307 |
Q |
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| T |
24925485 |
atcgtattgctaatgttgttcagaaaagattacacattacacaaacaagaaatagctggatgtaattaaagtacttcaaacaagaaaaagaaaagaaaaa |
24925386 |
T |
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| Q |
308 |
cgggacgtaattaatccaatacatgccttcaaaagatagtaattattcttcattaaaccttcaatgtcatgatttcac |
385 |
Q |
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| T |
24925385 |
cgggacgtaattaatccaatacatgccttcaaaagatagtaattattcttcattaaaccttcaatgtcatgatttcac |
24925308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 6902193 - 6902263
Alignment:
| Q |
141 |
tcaaccattgctttcatcaaaatgtttagtcccttggccgcaatcaa-aaataaaaaggggaaagtggatc |
210 |
Q |
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| T |
6902193 |
tcaaccattgctttcatcaatatgtttagtccctcggccgtaagcaagaacaaaaaaggggaaagtggatc |
6902263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 6902099 - 6902172
Alignment:
| Q |
15 |
gacattagcccaattcttttgacccaacaacaacatatcatcaacaaattgaaagtgtgatacaaccatcgaat |
88 |
Q |
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| T |
6902099 |
gacattagcccaacttttgtgacccaacaacaaagtatcgtcagcaaattgaaggtgtgacacaaccaccgaat |
6902172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 502497 - 502448
Alignment:
| Q |
36 |
acccaacaacaacatatcatcaacaaattgaaagtgtgatacaaccatcg |
85 |
Q |
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| T |
502497 |
acccaacaacaaagtatcatcaacaaattgaaggtgagacacaaccatcg |
502448 |
T |
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