View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_15 (Length: 402)
Name: NF20008_low_15
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 14783489 - 14783866
Alignment:
| Q |
18 |
tattttcctttaaaagaaaaaacaaatgtttaaatttcagatccgaattgccagtaataggaaaacttggaaatattcaagagttaacaaaattttaatt |
117 |
Q |
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| T |
14783489 |
tattttcctttaaaagaaaaaacaaatgtttaaatttcagatccgaattgccagtaataggaaaacttggaaatattcaagagttaacaaaattttaatt |
14783588 |
T |
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| Q |
118 |
ggacggtttgtattattagctcaactactcaacnnnnnnnnnnnnnnnnngaaaggatcagactttaaacttaggatctcaaaattgtatgtgtatttct |
217 |
Q |
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| T |
14783589 |
ggacggtttgtattattagctcaactactcaac-ttttttttttttttttgaaaggatcagactttaaagttaggatctcaaaattgtatgtgtatttct |
14783687 |
T |
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| Q |
218 |
aatggagattgctacannnnnnnnnngttgaaagaatggagattgctacattgtaatacatagttaaaacataaggtctatctaatatgagcacacttat |
317 |
Q |
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| T |
14783688 |
aacggagattgctacattttttttttttttaaacaacggagattgctacattgtaatacatagttaaaacataaggtctatctaatatgaccacattcat |
14783787 |
T |
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| Q |
318 |
atcatcaatccttagaatcgaaagatgtcgtggtat-cctcgaataattaaatattttttaaaacctaaattttcttgg |
395 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14783788 |
atcatcaatccttagaatcgaaagatgttgtggtatccctcgaataattaaatattttttaaaacctaaattttgttgg |
14783866 |
T |
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