View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_16 (Length: 390)
Name: NF20008_low_16
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 2 - 387
Target Start/End: Original strand, 28638512 - 28638897
Alignment:
| Q |
2 |
tcataaacgacaccaagtgtgttgatctcagcctcgaccggaacaacattcatgacccaaactggatcatcaatcattgcagctgcaagtcctcccaagt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28638512 |
tcataaacgacaccaagtgtgttgatctcagcctcgaccggaacaacattcatgacccaaactggatcatcaatcattgcagctgcaaatcctcccaagt |
28638611 |
T |
|
| Q |
102 |
aagcattcatatcaagtaaattacggtatctccccggctctgctagctgataatcaagtgtcttgtagtatgcaactctcttcttccataattcagtgtt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28638612 |
aagcattcatatcaagtaaattacggtatctccccggctctgctagctgataatcaagtgtcttgtagtatgcaactctcttcttccataattcagtgtt |
28638711 |
T |
|
| Q |
202 |
ttctttgaacatctcagctgtgattccatccaaacttccactgctaatccttggtggaactgatgttagtctctcaggccaattcgacaatcctccacca |
301 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28638712 |
ttctttgaacatctcagctgtgattccatccaaacttccactgctaatccttggtggaactgatgttagtctctcaggccaattcgacaatcctctacca |
28638811 |
T |
|
| Q |
302 |
ctaacttcttttatgtcagttacctcaggaagtggtgtcaaacatgtatccattttggtgtacctaaaatgaagaagaagaaaaat |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28638812 |
ctaacttcttttatgtcagttacctcaggaagtggtgtcaaacatgtatccattttggtgtacctaaagtgaagaagaagaaaaat |
28638897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 10 - 312
Target Start/End: Original strand, 12400834 - 12401136
Alignment:
| Q |
10 |
gacaccaagtgtgttgatctcagcctcgaccggaacaacattcatgacccaaactggatcatcaatcattgcagctgcaagtcctcccaagtaagcattc |
109 |
Q |
| |
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||||||||| || ||||| |||||||| || ||||||| |||||||||||||| |||||||||| || ||||||||||| ||||||||||||| |||| |
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| T |
12400834 |
gacaccaagagtattgatttcagcctcaacaggaacaatgttcatgacccaaacaggatcatcaaccagtgcagctgcaaagcctcccaagtaagaattc |
12400933 |
T |
|
| Q |
110 |
atatcaagtaaattacggtatctccccggctctgctagctgataatcaagtgtcttgtagtatgcaactctcttcttccataattcagtgttttctttga |
209 |
Q |
| |
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|||||||| | ||| | ||||| || | ||||||||||||| ||||||| |||||||| |||| ||||||| |||||||| ||||| |||||||||| |
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| T |
12400934 |
atatcaagaagatttctatatcttccagtctctgctagctgagaatcaagggtcttgtaatatgattctctctttttccataactcagtattttctttga |
12401033 |
T |
|
| Q |
210 |
acatctcagctgtgattccatccaaacttccactgctaatccttggtggaactgatgttagtctctcaggccaattcgacaatcctccaccactaacttc |
309 |
Q |
| |
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||||||| | ||| ||||| | ||||||| ||| ||||||||||| |||| ||| |||||||||| ||||| || || | | |||||||| |||||| |
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| T |
12401034 |
acatctctggtgttattcctttcaaactttcaccactaatccttggaggaattgaagttagtctctttggccactttgatatttctccaccagcaacttc |
12401133 |
T |
|
| Q |
310 |
ttt |
312 |
Q |
| |
|
||| |
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|
| T |
12401134 |
ttt |
12401136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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