View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_17 (Length: 364)
Name: NF20008_low_17
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 51874776 - 51874431
Alignment:
| Q |
1 |
ggaacatgaagagtaacagatatggcggaacaatacgttaatggcaatgttatattttgtgttcttaggtaaatacgaagaggatgaagaaacgagagaa |
100 |
Q |
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| T |
51874776 |
ggaacatgaagagtaacagatatggctgaacaatacgttaatggcaatgttatattttgtgttcttaggtaaatacgaagaggatgaagaaacgagagaa |
51874677 |
T |
|
| Q |
101 |
agaaaagatctggtagtgaaaagagaatgaaagtttgtgctgttgatgaaatttcttcatcttgaccacaagacatgagaatctttttcatgttaagcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51874676 |
agaaaagatctggtagtgaaaagagaatgaaagtttgtgctgttgatgaaatttcttcatcttgaccacaagacatgagaatctttttcatgttaagcca |
51874577 |
T |
|
| Q |
201 |
taaatatgcaatgggaatggaagtggaaagaagtaaaagaacggctctttgaagagttaagccaagtatcttccattgtttagctccataagcttgtcca |
300 |
Q |
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| T |
51874576 |
taaatatgcaatgggaatggaagtggaaagaagtaaaagaacggttctttgaagagttaagccaagtatcttccattgtttagctccataagcttgtcca |
51874477 |
T |
|
| Q |
301 |
caaatgggttccattcccatggctaaaccagataggacagaataac |
346 |
Q |
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| T |
51874476 |
caaatgggttccattcccatggctaaaccagataggacagaataac |
51874431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 220 - 334
Target Start/End: Original strand, 28506275 - 28506389
Alignment:
| Q |
220 |
gaagtggaaagaagtaaaagaacggctctttgaagagttaagccaagtatcttccattgtttagctccataagcttgtccacaaatgggttccattccca |
319 |
Q |
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| T |
28506275 |
gaagttgaaagaagaagaagaactgttctttgaagtgttaagccaagtatcttccattgttttgctccataagcttgtccacaaattggttccattccca |
28506374 |
T |
|
| Q |
320 |
tggctaaaccagata |
334 |
Q |
| |
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|||||||||| |||| |
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| T |
28506375 |
tggctaaacctgata |
28506389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 2989905 - 2989852
Alignment:
| Q |
279 |
tttagctccataagcttgtccacaaatgggttccattcccatggctaaaccaga |
332 |
Q |
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|||||| ||| ||||||| |||||||| ||||||||||||||||| | |||||| |
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| T |
2989905 |
tttagcaccaaaagcttgaccacaaataggttccattcccatggcaagaccaga |
2989852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 10676415 - 10676353
Alignment:
| Q |
258 |
taagccaagtatcttccattgtttagctccataagcttgtccacaaatgggttccattcccat |
320 |
Q |
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||||| ||| ||||||||||| || ||||||| ||||| ||||||||| ||||||||||||| |
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| T |
10676415 |
taagcaaagcatcttccattgctttgctccattagcttctccacaaataagttccattcccat |
10676353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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