View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_18 (Length: 364)
Name: NF20008_low_18
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 52698910 - 52698565
Alignment:
| Q |
1 |
tacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698910 |
tacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgta |
52698811 |
T |
|
| Q |
101 |
gttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698810 |
gttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagt |
52698711 |
T |
|
| Q |
201 |
aaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698710 |
aaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctcc |
52698611 |
T |
|
| Q |
301 |
agtacccaaggcaatgaggccaagtgcactatacaagaataagttt |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698610 |
agtacccaaggcaatgaggccaagtgcactatacaagaataagttt |
52698565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 52712729 - 52712390
Alignment:
| Q |
1 |
tacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgta |
100 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||| ||||| ||||| |||||| ||| ||| | || | | ||||||||||| || |||| |
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| T |
52712729 |
tacaataacctgaagaaacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgta |
52712630 |
T |
|
| Q |
101 |
gttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagt |
200 |
Q |
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| T |
52712629 |
gttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaaga |
52712530 |
T |
|
| Q |
201 |
aaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctcc |
300 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| || |||||||| || || |||||||||||||||||||| |
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| T |
52712529 |
aaaaccaattaaagaaagcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctcc |
52712430 |
T |
|
| Q |
301 |
agtacccaaggcaatgaggccaagtgcactatacaagaat |
340 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||||||||| |
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| T |
52712429 |
ggtacctaaggcaatgagaccaagtgcaccgtacaagaat |
52712390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 52721550 - 52721212
Alignment:
| Q |
1 |
tacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgta |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||| ||| |||| | || | | ||||||||||| || | || |
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|
| T |
52721550 |
tacaataacctgaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccata |
52721451 |
T |
|
| Q |
101 |
gttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagt |
200 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| | |||||||||||| |||||| |
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| T |
52721450 |
gttattgtgggtattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaaga |
52721351 |
T |
|
| Q |
201 |
aaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctcc |
300 |
Q |
| |
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|||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| || |||||||| || || |||||||| ||||||||||| |
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| T |
52721350 |
aaaaccaattaaagaaagcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggcttgattcctcc |
52721251 |
T |
|
| Q |
301 |
agtacccaaggcaatgaggccaagtgcactatacaagaa |
339 |
Q |
| |
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|||||||| ||||| ||||||||||||| |||||||| |
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|
| T |
52721250 |
tgtacccaaagcaataaggccaagtgcaccgtacaagaa |
52721212 |
T |
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