View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_19 (Length: 358)
Name: NF20008_low_19
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 4736131 - 4736458
Alignment:
| Q |
1 |
tgtcttgaatttctattaaatatgaaaattatgcccatgatatcaacgtatatcatagattaatctaacaatgttgaatgtaatgtnnnnnnnnttctta |
100 |
Q |
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| T |
4736131 |
tgtcttgaatttctattaaatatgaaaattatgcccatgatatcaacgtatatcatagattaatttaacaatgttgaatgtaatgtaaaaaaaattctta |
4736230 |
T |
|
| Q |
101 |
ttgtttttgccattaccagatcattttgttgattatatgcgggaacactttgttcaacatccaatacttttcattgacaatgagcagaagaaagaatttg |
200 |
Q |
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| T |
4736231 |
ttgtttttgccattaccagatcattttgttgatta---------atactttgttcaacatccaatacttttcattgacaatgagcagaagaaattttttg |
4736321 |
T |
|
| Q |
201 |
aaatctatctatacaagaaaaatatgacatttgaaataggcctttcgcgggaagatttttgtgcttcaaatgatttaaaagctcgcgacattattcgttt |
300 |
Q |
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| T |
4736322 |
aa----atatatacaagaaaaatatgacatttgaaataggcctttcgtggaaagatttttgtgcttcaaatgatttaaaagctcgcgacattattcgttt |
4736417 |
T |
|
| Q |
301 |
taagtttacaatcgaaaatcctcatttgagacgtaatgtttt |
342 |
Q |
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| T |
4736418 |
taagtttacaatcgaaaatcctca-ttgagacgtaatgtttt |
4736458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 31390158 - 31390472
Alignment:
| Q |
1 |
tgtcttgaatttctattaaatatgaaaattatgcccatgatatcaacgtatatcatagattaatctaacaatgttgaatgtaatgtnnnnnnnnttctta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |||||| |
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| T |
31390158 |
tgtcttgaatttctattaaatatgaaaattatgtacatgatatcag---------tagattaatctaacaatgttgaatgtattgtaaaaaaa-ttctta |
31390247 |
T |
|
| Q |
101 |
ttgtttttgccattaccagatcattttgttgattatatgcgggaacactttgttcaacatccaatacttttcattgacaatgagcagaagaaagaatttg |
200 |
Q |
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|||||||| ||||||||| |||||||||||| ||| ||||| ||||||||||||||||| ||||| ||| |||||| ||||| ||| | ||| || | | |
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| T |
31390248 |
ctgtttttggcattaccaggtcattttgttgactatttgcggcaacactttgttcaacattcaatattttgcattgataatgaacaggaaaaaaaaat-g |
31390346 |
T |
|
| Q |
201 |
aaatctatctatacaagaaaaatatgacatttgaaataggcctttcgcgggaagatttttgtgcttcaaatgatttaaaagctcgcgacattattcgttt |
300 |
Q |
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| T |
31390347 |
aagtctatata----agaaaagtatgacatttaaaataggtttttcgtggaaagctttttgtgcttcaaatgatttaaaagcccgggacattatt-gttt |
31390441 |
T |
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| Q |
301 |
taagtttacaatcgaaaatcctcatttgaga |
331 |
Q |
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||| || |||||| ||||||||||||||||| |
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| T |
31390442 |
taaattcacaatcaaaaatcctcatttgaga |
31390472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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