View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_2 (Length: 711)
Name: NF20008_low_2
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 293 - 711
Target Start/End: Complemental strand, 40677207 - 40676784
Alignment:
| Q |
293 |
aaatacattattttgataaactactcaagctacttgtgataaaatagtttgtgcaaaaatttatgcagattttattacaaaataaccagcataacattga |
392 |
Q |
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| T |
40677207 |
aaatacattattttgataaactactcaagctacttgtgataaaatagtttgtgcaaaaatttatgcagattttattacaaaataaccagcataacattga |
40677108 |
T |
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| Q |
393 |
gaaaatgcttacttcattaaagaggtattctcaaatttgcactaagttatgacatcaaatgaaa-----ataggtaaagagtagagagtagaagaaacct |
487 |
Q |
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| T |
40677107 |
gaaaatgcttacttcattaaagaggtattctcaaatttgcactaagttatgacatcaaataaaatcaaaataggtaaagagtagagagtagaagaaacct |
40677008 |
T |
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| Q |
488 |
tagatttttcaaaccccaccagaggcaataaaaatatttttggaagaatcttgaggaagagacgtgatcagtaaaagcatcagcaaacattccaaactga |
587 |
Q |
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| T |
40677007 |
tagatttttcaaaccccaccagaggcaataaaaatatttttggaagaatcttgaggaagagacgtgatcagtaaaagcatcagcaaacattccaaactga |
40676908 |
T |
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| Q |
588 |
aagtgatttttatcattgagtgcatcacaagctgtgaggactctagtgcgtctgaaccaaacttgacgttcattattaagaagtgtggtacaatcaagaa |
687 |
Q |
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| T |
40676907 |
aagtgatttttatcctggaatgcatcacaagctgtgaggactctagtgcgtctgaaccaaacttgacgttcattattaacaagtgtgctacaatcaagaa |
40676808 |
T |
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| Q |
688 |
aagaaggatcacaagaaggagaat |
711 |
Q |
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| T |
40676807 |
aagaaggatcacaagaaggagaat |
40676784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 40677531 - 40677236
Alignment:
| Q |
1 |
acagtttcactttccaattactatacctgcatgttaccaatgagatgtgcaaacagtataagacctgctatacatatgaaacttgaaaataatgtttcac |
100 |
Q |
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| T |
40677531 |
acagtttcactttccaattactatacctgcatgttaccaatgagatgtgcaaacagtataagacctgctatacatataaaacttgaaaataatgtttcac |
40677432 |
T |
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| Q |
101 |
cactgtaagtgctagtcttaagattttgtccatatgaactgcacattgtnnnnnnnnntagtttagaatgagttatgagatgactgctcgctcactacta |
200 |
Q |
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| T |
40677431 |
cactgtaagtgctagtcttaagattttgtccatatgaactgcacattgt-aaaaaaaatagtttagaatgagttatgagatgactgctcactcactacta |
40677333 |
T |
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| Q |
201 |
atatcaaatggacttgtcatgtattgatgtctttgatacaatatttaggtgacatttagaacaatcgatttaaacaattaaacttatctaaaaaata |
297 |
Q |
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| T |
40677332 |
atatcaaatggacttgtcatgtattgatgtctttgatacaatatttaggtgacatttagaacaatcgatttaaacaattaaacttatctaaaaaata |
40677236 |
T |
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