View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20008_low_20 (Length: 347)

Name: NF20008_low_20
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20008_low_20
NF20008_low_20
[»] chr8 (18 HSPs)
chr8 (52-237)||(40585529-40585714)
chr8 (92-200)||(4283368-4283478)
chr8 (92-198)||(11383830-11383938)
chr8 (55-200)||(42435205-42435353)
chr8 (92-200)||(40328623-40328733)
chr8 (72-172)||(33655548-33655648)
chr8 (55-200)||(40221551-40221699)
chr8 (55-200)||(44353598-44353746)
chr8 (62-200)||(10239974-10240109)
chr8 (109-200)||(18655262-18655354)
chr8 (122-201)||(10020321-10020399)
chr8 (281-322)||(42498262-42498302)
chr8 (87-198)||(10101370-10101480)
chr8 (281-322)||(34256567-34256607)
chr8 (43-151)||(3817598-3817706)
chr8 (234-266)||(10929808-10929840)
chr8 (239-271)||(32902296-32902328)
chr8 (281-325)||(41267037-41267081)
[»] chr4 (41 HSPs)
chr4 (85-192)||(3785927-3786034)
chr4 (41-205)||(22882962-22883128)
chr4 (41-205)||(22934626-22934792)
chr4 (55-200)||(35662248-35662394)
chr4 (55-200)||(41964221-41964368)
chr4 (92-200)||(379223-379332)
chr4 (55-205)||(26364071-26364224)
chr4 (104-200)||(41961267-41961364)
chr4 (55-200)||(12073198-12073346)
chr4 (92-200)||(54882864-54882974)
chr4 (55-200)||(50674060-50674208)
chr4 (114-201)||(33089754-33089842)
chr4 (52-200)||(33989665-33989815)
chr4 (92-200)||(12119383-12119491)
chr4 (104-200)||(46703356-46703453)
chr4 (110-198)||(2209575-2209665)
chr4 (92-200)||(8647982-8648092)
chr4 (92-200)||(8665251-8665361)
chr4 (85-201)||(35370552-35370668)
chr4 (55-200)||(55085579-55085727)
chr4 (115-200)||(32091346-32091431)
chr4 (113-200)||(50262912-50263001)
chr4 (55-200)||(6655762-6655910)
chr4 (43-163)||(6200117-6200237)
chr4 (281-325)||(34112885-34112929)
chr4 (143-200)||(40632341-40632399)
chr4 (281-322)||(12119607-12119648)
chr4 (55-143)||(40630790-40630879)
chr4 (88-200)||(35369656-35369767)
chr4 (103-177)||(27417199-27417274)
chr4 (283-325)||(16422663-16422705)
chr4 (281-322)||(4588027-4588067)
chr4 (281-322)||(5370143-5370183)
chr4 (118-203)||(20269533-20269616)
chr4 (281-322)||(22882810-22882851)
chr4 (281-322)||(22934474-22934515)
chr4 (281-322)||(56178697-56178737)
chr4 (43-151)||(25723482-25723590)
chr4 (282-322)||(33089947-33089987)
chr4 (240-280)||(38811302-38811342)
chr4 (288-320)||(44570427-44570459)
[»] chr3 (35 HSPs)
chr3 (43-198)||(20937452-20937607)
chr3 (43-198)||(34795664-34795819)
chr3 (109-238)||(1683349-1683478)
chr3 (55-200)||(6095813-6095961)
chr3 (43-147)||(35138975-35139079)
chr3 (92-200)||(34491057-34491167)
chr3 (109-200)||(26323290-26323382)
chr3 (55-200)||(49199684-49199833)
chr3 (55-200)||(36018657-36018805)
chr3 (55-200)||(40913145-40913293)
chr3 (92-200)||(46860315-46860426)
chr3 (55-200)||(4569757-4569905)
chr3 (60-200)||(30235936-30236079)
chr3 (55-200)||(54593511-54593658)
chr3 (55-200)||(47304058-47304205)
chr3 (52-200)||(5434092-5434242)
chr3 (114-200)||(39127413-39127499)
chr3 (92-200)||(55302179-55302289)
chr3 (92-198)||(41819740-41819846)
chr3 (55-173)||(43403975-43404095)
chr3 (282-324)||(2020208-2020250)
chr3 (286-325)||(25491024-25491063)
chr3 (287-322)||(35138765-35138800)
chr3 (111-173)||(43402032-43402095)
chr3 (208-238)||(2020120-2020150)
chr3 (281-319)||(20937724-20937762)
chr3 (239-280)||(8166570-8166611)
chr3 (281-322)||(19683949-19683989)
chr3 (281-322)||(37408526-37408566)
chr3 (288-321)||(40519258-40519291)
chr3 (281-322)||(45095231-45095271)
chr3 (89-142)||(50432848-50432901)
chr3 (282-326)||(8166512-8166556)
chr3 (244-280)||(24635276-24635312)
chr3 (281-325)||(26323130-26323174)
[»] chr1 (36 HSPs)
chr1 (52-200)||(41135624-41135773)
chr1 (92-200)||(34603420-34603529)
chr1 (55-200)||(11348504-11348652)
chr1 (92-197)||(34602557-34602663)
chr1 (55-200)||(47114977-47115125)
chr1 (92-200)||(193455-193565)
chr1 (55-197)||(7482449-7482592)
chr1 (92-200)||(37033287-37033397)
chr1 (55-200)||(42298189-42298337)
chr1 (60-200)||(13547303-13547446)
chr1 (60-200)||(13549214-13549357)
chr1 (60-200)||(37879125-37879268)
chr1 (92-200)||(29136091-29136201)
chr1 (55-200)||(37168103-37168251)
chr1 (109-198)||(47255556-47255647)
chr1 (92-200)||(28242232-28242342)
chr1 (92-198)||(19752529-19752637)
chr1 (92-194)||(31925926-31926030)
chr1 (122-201)||(3331428-3331506)
chr1 (55-200)||(19754297-19754448)
chr1 (72-177)||(12318720-12318825)
chr1 (94-200)||(25651931-25652039)
chr1 (104-167)||(6068449-6068512)
chr1 (282-325)||(16914231-16914274)
chr1 (52-151)||(9109666-9109766)
chr1 (85-200)||(22079159-22079274)
chr1 (125-200)||(16216712-16216786)
chr1 (125-233)||(4535652-4535758)
chr1 (281-319)||(22079384-22079422)
chr1 (288-321)||(4535541-4535574)
chr1 (288-321)||(5459980-5460013)
chr1 (281-322)||(6808520-6808561)
chr1 (281-322)||(9109479-9109520)
chr1 (281-321)||(3460764-3460804)
chr1 (240-272)||(16914297-16914329)
chr1 (281-325)||(25652154-25652198)
[»] chr7 (23 HSPs)
chr7 (55-200)||(6431777-6431925)
chr7 (55-200)||(2390088-2390236)
chr7 (60-200)||(2361186-2361328)
chr7 (55-200)||(48599548-48599696)
chr7 (92-200)||(6360126-6360236)
chr7 (60-198)||(34310932-34311073)
chr7 (60-200)||(29608547-29608690)
chr7 (92-200)||(4512604-4512714)
chr7 (104-200)||(3258852-3258948)
chr7 (55-200)||(4508920-4509068)
chr7 (55-200)||(4510762-4510910)
chr7 (83-163)||(43363667-43363747)
chr7 (43-164)||(5116429-5116551)
chr7 (55-200)||(8359531-8359680)
chr7 (85-194)||(22269809-22269921)
chr7 (92-200)||(22328612-22328722)
chr7 (87-193)||(23794049-23794154)
chr7 (281-324)||(5116672-5116715)
chr7 (113-166)||(22552683-22552736)
chr7 (281-322)||(36574575-36574616)
chr7 (281-323)||(3904675-3904717)
chr7 (67-193)||(1360375-1360502)
chr7 (281-322)||(35853982-35854022)
[»] chr6 (19 HSPs)
chr6 (55-200)||(5043433-5043581)
chr6 (55-200)||(21593472-21593618)
chr6 (55-200)||(2973153-2973301)
chr6 (91-200)||(603294-603405)
chr6 (111-200)||(22425042-22425130)
chr6 (55-200)||(17762795-17762943)
chr6 (55-200)||(3808923-3809070)
chr6 (4-200)||(26830338-26830537)
chr6 (90-200)||(11660450-11660559)
chr6 (92-200)||(5741005-5741114)
chr6 (281-322)||(25073636-25073677)
chr6 (137-200)||(25073457-25073521)
chr6 (53-140)||(25072989-25073076)
chr6 (281-322)||(5406260-5406300)
chr6 (281-322)||(5410585-5410625)
chr6 (281-322)||(5413454-5413494)
chr6 (281-322)||(28137468-28137508)
chr6 (281-322)||(31404735-31404775)
chr6 (281-325)||(5740054-5740098)
[»] chr5 (27 HSPs)
chr5 (72-200)||(14689626-14689754)
chr5 (55-200)||(40147067-40147215)
chr5 (60-200)||(27015343-27015486)
chr5 (43-177)||(316560-316692)
chr5 (55-200)||(5057853-5058001)
chr5 (43-151)||(33906294-33906402)
chr5 (104-200)||(38746861-38746959)
chr5 (4-205)||(35615927-35616127)
chr5 (55-200)||(213275-213419)
chr5 (93-200)||(28278161-28278270)
chr5 (281-334)||(35616237-35616290)
chr5 (109-200)||(16641155-16641247)
chr5 (92-177)||(4160477-4160562)
chr5 (281-322)||(13695750-13695791)
chr5 (104-200)||(27637828-27637928)
chr5 (281-321)||(8445783-8445823)
chr5 (240-280)||(10054929-10054969)
chr5 (281-325)||(30793204-30793248)
chr5 (281-325)||(32609603-32609647)
chr5 (281-321)||(33906091-33906131)
chr5 (5-76)||(30802697-30802768)
chr5 (287-326)||(32583338-32583377)
chr5 (281-319)||(316830-316868)
chr5 (124-198)||(8019464-8019537)
chr5 (288-325)||(5007806-5007843)
chr5 (281-322)||(25412828-25412868)
chr5 (286-322)||(10054876-10054912)
[»] chr2 (14 HSPs)
chr2 (55-200)||(1631946-1632094)
chr2 (55-200)||(42288324-42288472)
chr2 (52-233)||(42261792-42261974)
chr2 (55-200)||(35447098-35447246)
chr2 (93-200)||(17450436-17450544)
chr2 (92-200)||(45726773-45726883)
chr2 (43-238)||(30218211-30218407)
chr2 (281-320)||(33648239-33648278)
chr2 (92-194)||(43730992-43731093)
chr2 (281-319)||(24398125-24398163)
chr2 (161-233)||(42261660-42261734)
chr2 (92-200)||(24397902-24398007)
chr2 (281-326)||(42261541-42261586)
chr2 (287-325)||(41454308-41454346)
[»] scaffold0197 (1 HSPs)
scaffold0197 (44-206)||(1606-1778)
[»] scaffold0002 (4 HSPs)
scaffold0002 (52-233)||(490627-490809)
scaffold0002 (161-233)||(490495-490569)
scaffold0002 (281-326)||(490376-490421)
scaffold0002 (281-322)||(434601-434641)
[»] scaffold0466 (1 HSPs)
scaffold0466 (55-190)||(7134-7272)
[»] scaffold0014 (1 HSPs)
scaffold0014 (55-200)||(80497-80645)
[»] scaffold0176 (1 HSPs)
scaffold0176 (92-194)||(18222-18325)
[»] scaffold0286 (1 HSPs)
scaffold0286 (55-200)||(11364-11512)
[»] scaffold0053 (1 HSPs)
scaffold0053 (281-325)||(25121-25165)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 52 - 237
Target Start/End: Original strand, 40585529 - 40585714
Alignment:
Q  52 gagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaa 151  Q
    ||||||| ||||||||| ||||||| || ||| ||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||    
T  40585529 gagagattcatggggtttgaaaacacatcaaaggagagtctttgtgagcaatttgggtgagtattggtagaccaaaagagaagatccttaggaaatcaaa 40585628  T
Q  152 tggtaagagttggttctcttttggggatagattctagagttgggaaaca-cttagattgagtgaattcattgagtctcttgtttatg 237  Q
       |||| |||||||||||||||||| ||||||||| |||| | ||| | |||||  |||||||| |||||||||||||||||||||    
T  40585629 gactaagggttggttctcttttgggggtagattctaaagtttgaaaataccttag-gtgagtgaaatcattgagtctcttgtttatg 40585714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 4283368 - 4283478
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||||||| | |||| |||||||||||||| |||| |||||||||||    
T  4283368 tttgtgagaaacttggttgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctaga 4283467  T
Q  190 gttgggaaaca 200  Q
    |||||||||||    
T  4283468 gttgggaaaca 4283478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 11383830 - 11383938
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||| | |||| |||||||||||||| |||| |||||||||||    
T  11383830 tttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctaga 11383929  T
Q  190 gttgggaaa 198  Q
    |||||||||    
T  11383930 gttgggaaa 11383938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 42435353 - 42435205
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || ||  |||||||||| ||||| || |||  ||||||||| || ||||||||||||||||||||| |||||||||     
T  42435353 agattcatggggttgggaaacatatgaatggagagtcttttgtgagcaacttgagtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 42435254  T
Q  153 ggtaagagttggttctcttttg-gggatagattctagagttgggaaaca 200  Q
    | |||| ||||||||||||||| ||| |||||||||||||||| |||||    
T  42435253 gctaagggttggttctcttttgagggttagattctagagttggtaaaca 42435205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 40328623 - 40328733
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| ||||||||| || |||||||||||||||| |||| ||||||||| | || |||||||||||||||| |||| |||||||||||    
T  40328623 tttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatctttagtgaaatcaaaggctatgagttggttctcttttgggggttagattctaga 40328722  T
Q  190 gttgggaaaca 200  Q
    |||||||||||    
T  40328723 gttgggaaaca 40328733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 33655648 - 33655548
Alignment:
Q  72 aaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctctt 171  Q
    ||||| || ||| ||| ||||||||||| ||||||| ||| |||| ||||| ||||||||||||||||||| |||||||| | |||| ||||||||||||    
T  33655648 aaacacattaaaggagtgtctttgtgagcaatttgggtgaatcttaggagaacaaaagagaagatccttagaaaatcaaaggttaagggttggttctctt 33655549  T
Q  172 t 172  Q
    |    
T  33655548 t 33655548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 40221551 - 40221699
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || || | |||||||||  | ||||||||||||||||||||| |||||||||     
T  40221551 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttaggtgagtcttgtaaaaccaaaagagaagatccttagtgaaatcaaag 40221650  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||  |||||||||||||| |||| ||||||||||||||||||||||    
T  40221651 gctaaaggttggttctcttttgggggttagattctagagttgggaaaca 40221699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 44353598 - 44353746
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtctttg-tgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||||||||| || |   ||||||| | | |||| || |||| ||||||||| || ||||||||| ||||| ||||| |||||||||     
T  44353598 agattcatggggttggaaaacacatgagtggagagtcatcggtgagcaacttgggtgagtcttgtgaaaccaaaagaaaagattcttagtgaaatcaaag 44353697  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  44353698 gctaagggttggttctcttttgggggttagattctagagttgggaaaca 44353746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 10239974 - 10240109
Alignment:
Q  62 tggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagt 161  Q
    ||||||| ||||||| || |||||| |||||||||||| || |||| ||| ||||||   || |||| ||||||||||||  |||||  | | |||||||    
T  10239974 tggggttagaaaacacatcaaatgaaagtctttgtgagtaacttggatgaatcttggactactaaaaaagaagatccttaaaaaatc--aggctaagagt 10240071  T
Q  162 tggttctcttttggggatagattctagagttgggaaaca 200  Q
    |||||||| ||||||| ||||||||||| ||||||||||    
T  10240072 tggttctc-tttggggttagattctagatttgggaaaca 10240109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 18655262 - 18655354
Alignment:
Q  109 tgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaaca 200  Q
    ||||||||| || | ||||||||||||||||||| ||||||||| | |||| |||| | ||||||||||| ||||||||||| || |||||||    
T  18655262 tgagtcttgtgaaatcaaaagagaagatccttagtgaaatcaaaggctaagggttgatactcttttggggttagattctagacttaggaaaca 18655354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 10020321 - 10020399
Alignment:
Q  122 accaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaacac 201  Q
    |||||||||| ||||||||||||||||||| | |||| ||| ||| |||||| ||| | |||||||||||||||||||||    
T  10020321 accaaaagaggagatccttaggaaatcaaaggctaagggtttgtt-tctttttgggttggattctagagttgggaaacac 10020399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 42498262 - 42498302
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  42498262 gtaacccttttgtatttctttgt-aagaactcattgatagtg 42498302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 10101480 - 10101370
Alignment:
Q  87 gagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattct 186  Q
    ||||||||||||| || |||| ||| |||| ||||| |||||||| |||||||||  ||||||||   |||| |||||| |  |||||||| ||||||||    
T  10101480 gagtctttgtgagcaacttggatgaatcttaggagatcaaaagaggagatccttattaaatcaaagtctaagggttggtac-gttttggggttagattct 10101382  T
Q  187 agagttgggaaa 198  Q
    || ||| |||||    
T  10101381 agtgttaggaaa 10101370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 34256607 - 34256567
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  34256607 gtaacccttttgtatctctttgt-aagaactcattgatagtg 34256567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 3817706 - 3817598
Alignment:
Q  43 ccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag 142  Q
    ||||||| ||| |||| ||||||||||||||| | |||| |  ||| |||||||||| || ||||   | | || |||||||||| ||||||||| || |    
T  3817706 ccttttggagaaagattcatggggttggaaaatacataagagaagattctttgtgagcaaattgggcaaatatttggagaccaaacgagaagatcttttg 3817607  T
Q  143 gaaatcaaa 151  Q
    |||||||||    
T  3817606 gaaatcaaa 3817598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 10929808 - 10929840
Alignment:
Q  234 tatggtaaatgggtagaaattatgtttgttctt 266  Q
    ||||| |||||||||||||||||||||||||||    
T  10929808 tatggaaaatgggtagaaattatgtttgttctt 10929840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 32902328 - 32902296
Alignment:
Q  239 taaatgggtagaaattatgtttgttcttggaga 271  Q
    |||||||||||||||||||||||||| ||||||    
T  32902328 taaatgggtagaaattatgtttgttcatggaga 32902296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 41267037 - 41267081
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    ||||| ||||||||||||||| |||||||||  ||||||||||||    
T  41267037 gtaactcttttgtatttctttctaaagaacttcttgatagtgaag 41267081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 3785927 - 3786034
Alignment:
Q  85 gagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagatt 184  Q
    ||||||||||||||| || |||   |||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||    
T  3785927 gagagtctttgtgagcaaattgtgcgagtcttgggagaccaaaagagaatatccttaggaaatcaaaggctaagagttggttctcttttgggggtagatt 3786026  T
Q  185 ctagagtt 192  Q
    ||||||||    
T  3786027 ctagagtt 3786034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 22883128 - 22882962
Alignment:
Q  41 taccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatcctt 140  Q
    ||||||||| |||||||  ||| ||||| | ||||| || ||||||||||||||||||| |||||||  ||||||| |||||||||||||||||||||||    
T  22883128 taccttttggagagagactcatagggttaggaaacacatcaaatgagagtctttgtgagcaatttgggcgagtcttaggagaccaaaagagaagatcctt 22883029  T
Q  141 aggaaatcaaatggtaagagttggttctctttt--ggggatagattctagagttgggaaacacttag 205  Q
    || |||||||| | |||  ||||||||||||||  |||| ||||||||||| |||| ||||| ||||    
T  22883028 agaaaatcaaaggataatggttggttctcttttggggggttagattctagaattggaaaacaattag 22882962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 22934792 - 22934626
Alignment:
Q  41 taccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatcctt 140  Q
    ||||||||| |||||||  ||| ||||| | ||||| || ||||||||||||||||||| |||||||  ||||||| |||||||||||||||||||||||    
T  22934792 taccttttggagagagactcatagggttaggaaacacatcaaatgagagtctttgtgagcaatttgggcgagtcttaggagaccaaaagagaagatcctt 22934693  T
Q  141 aggaaatcaaatggtaagagttggttctctttt--ggggatagattctagagttgggaaacacttag 205  Q
    || |||||||| | |||  ||||||||||||||  |||| ||||||||||| |||| ||||| ||||    
T  22934692 agaaaatcaaaggataatggttggttctcttttggggggttagattctagaattggaaaacaattag 22934626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 35662248 - 35662394
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagt-ctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatg 153  Q
    |||| ||||||||||||||||| || ||  |||||| ||||||||| || |||| ||||||||| || |||||||||||||||||||||||||||||| |    
T  35662248 agattcatggggttggaaaacacatgaatggagagttctttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttaggaaatcaaa-g 35662346  T
Q  154 gtaagagttggttctcttttggg-gatagattctagagttgggaaaca 200  Q
     |||| ||||||||||||||||| | ||||||||||||||||||||||    
T  35662347 ctaagggttggttctcttttgggtgttagattctagagttgggaaaca 35662394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 41964221 - 41964368
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || ||||||||||||||||||||| |||||||||     
T  41964221 agattcatggggttgggaaacacatgagtagagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 41964320  T
Q  153 ggtaagagttggttctcttttggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||||||| ||||||||||||||||||||||    
T  41964321 gctaagggttggttctcttttggggttagattctagagttgggaaaca 41964368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 379223 - 379332
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttg-gggatagattctagag 190  Q
    |||||||| || |||| ||||||||| || | |||||||||||||||||||||||||||| | |||| ||||||||||||||| ||| ||||||||||||    
T  379223 tttgtgagcaacttgggtgagtcttgtgaaatcaaaagagaagatccttaggaaatcaaaggctaagggttggttctcttttgtgggttagattctagag 379322  T
Q  191 ttgggaaaca 200  Q
    ||||||||||    
T  379323 ttgggaaaca 379332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 26364071 - 26364224
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   ||||||| |||||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||||    
T  26364071 agattcatggggttgggaaacacatgagtggagagtcatttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaat 26364170  T
Q  153 ggtaagagttggttctcttttgg-ggatagattctagagttgggaaacacttag 205  Q
    | |||| |||||||||||||||| || |||||| ||||||||||||||| ||||    
T  26364171 gctaagggttggttctcttttggtggttagattttagagttgggaaacaattag 26364224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 41961267 - 41961364
Alignment:
Q  104 ttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttg-gggatagattctagagttgggaaaca 200  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||||| | |||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  41961267 ttgggtgagtcttgggagaccaaaaaagaatatccttaggaaatcaaaagctaagggttggttctcttttgagggttagattctagagttgggaaaca 41961364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 12073198 - 12073346
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||||||||| || |    |||||| |||||||| || |||| ||||||||  || ||||||||||||||||||||| ||||||||||    
T  12073198 agattcatggggttggaaaacacatgagtgaagagtcttttgtgagcaacttgggtgagtcttatgaaaccaaaagagaagatccttagtgaaatcaaat 12073297  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  12073298 gctaagggttggttctcttttgggggttagattctagagttgggaaaca 12073346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 54882864 - 54882974
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    ||||||||||| |||| ||||||| | || ||||||||||||||||||||| ||||||||| | |||| |||||||||||||| |||| |||||||||||    
T  54882864 tttgtgagaaacttgggtgagtctcgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctaga 54882963  T
Q  190 gttgggaaaca 200  Q
    |||||||||||    
T  54882964 gttgggaaaca 54882974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 50674208 - 50674060
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || ||||||||||||||||||||| |||||||||     
T  50674208 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 50674109  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| |||||||||||||||| |||||    
T  50674108 gctaagggttggttctcttttgggggttagattctagagttggaaaaca 50674060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 33089754 - 33089842
Alignment:
Q  114 cttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttgg-ggatagattctagagttgggaaacac 201  Q
    ||||||||||||||||||||||||||||| |||||||| | |||  |||||||||||||||| || |||||| ||||||||||||||||    
T  33089754 cttgggagaccaaaagagaagatccttagaaaatcaaaggctaaaggttggttctcttttggaggttagattatagagttgggaaacac 33089842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 33989665 - 33989815
Alignment:
Q  52 gagagatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaa 150  Q
    ||||||| |||||| |||| ||||| || |   ||||||| |||||||| || |||| ||||||||  || |||||||||||||||||||||| ||||||    
T  33989665 gagagattcatgggattgggaaacacatgagtggagagtcatttgtgagcaacttgggtgagtcttttgaaaccaaaagagaagatccttaggtaatcaa 33989764  T
Q  151 atggtaagagttggttctcttttgg-ggatagattctagagttgggaaaca 200  Q
    | | ||||  || |||||||||||| || ||||||||||||||||||||||    
T  33989765 aggctaaggatttgttctcttttggaggttagattctagagttgggaaaca 33989815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 12119383 - 12119491
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctctttt-ggggatagattctagag 190  Q
    |||||||| ||||||| || |||||| || |||||||||||||||||||| |||||| || | |||| |||||||||||||| |||| |||||| |||||    
T  12119383 tttgtgagcaatttgggtgtgtcttgtgaaaccaaaagagaagatccttaagaaatcgaa-gttaagggttggttctcttttgggggttagattatagag 12119481  T
Q  191 ttgggaaaca 200  Q
    ||||||||||    
T  12119482 ttgggaaaca 12119491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 46703356 - 46703453
Alignment:
Q  104 ttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    |||| ||||||||| || |||||||||||| ||||||||||||||||| | ||| ||||||||||||||| |||| |||||| ||| |||||||||||    
T  46703356 ttgggtgagtcttgtgaaaccaaaagagaaaatccttaggaaatcaaaggctaaaagttggttctcttttgggggttagattatagtgttgggaaaca 46703453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 2209575 - 2209665
Alignment:
Q  110 gagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctagagttgggaaa 198  Q
    |||||||| || ||||||||||||||||||||| ||||||||| | || | |||||||||||||| |||| ||||||||||||||||||||    
T  2209575 gagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctatgggttggttctcttttgggggttagattctagagttgggaaa 2209665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 8647982 - 8648092
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| ||||||||| || | ||||||||||||||||||| ||||||||||| || | |||||||||||||| |||| |||||||| ||    
T  8647982 tttgtgagcaacttgggtgagtcttgtgaaatcaaaagagaagatccttagtgaaatcaaatgttatgtgttggttctcttttgggggttagattctgga 8648081  T
Q  190 gttgggaaaca 200  Q
    ||| |||||||    
T  8648082 gttaggaaaca 8648092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 8665251 - 8665361
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||| | || | ||||||| |||||| |||| |||||||| ||    
T  8665251 tttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggttatgtgttggttttcttttgggggttagattctgga 8665350  T
Q  190 gttgggaaaca 200  Q
    |||||||||||    
T  8665351 gttgggaaaca 8665361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 35370668 - 35370552
Alignment:
Q  85 gagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagatt 184  Q
    |||||||||||| || || |||| |||||||  ||| ||||||| |||||||| || |||||||||| | |||  |||||||||||||||| | ||||||    
T  35370668 gagagtctttgtaagcaacttgggtgagtctatggataccaaaatagaagatctttgggaaatcaaaggctaatggttggttctcttttggagttagatt 35370569  T
Q  185 ctagagttgggaaacac 201  Q
     |||| |||||||||||    
T  35370568 atagaattgggaaacac 35370552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 55085727 - 55085579
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   ||||||| |||||||| || |||  ||||||||| || ||||||||||||||||||||| |||||||||     
T  55085727 agattcatggggttgggaaacacatgagtggagagtcatttgtgagcaacttgtgtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 55085628  T
Q  153 ggtaagagttggttct-cttttggggatagattctagagttgggaaaca 200  Q
    | |||| |||| |||| |||| |||| |||||||||||||| |||||||    
T  55085627 gctaagggttgattctcctttgggggttagattctagagttcggaaaca 55085579  T

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Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 32091346 - 32091431
Alignment:
Q  115 ttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaaca 200  Q
    ||||||||||| | ||||||||||||||||||||||| |  ||| ||||||||| ||||||||  |||||||| |||| |||||||    
T  32091346 ttgggagaccagaggagaagatccttaggaaatcaaaggcaaagtgttggttcttttttggggtaagattctaaagtttggaaaca 32091431  T

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Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 50263001 - 50262912
Alignment:
Q  113 tcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctcttttggggat-agattctagagttgggaaaca 200  Q
    ||||| || |||||||||||||| |||||| ||||||||| | |||  |||||||||||||||||| | |||||||||||||||||||||    
T  50263001 tcttgtgaaaccaaaagagaagacccttagtgaaatcaaaggctaatggttggttctcttttgggggttagattctagagttgggaaaca 50262912  T

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Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 6655762 - 6655910
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaa-tcaaat 152  Q
    |||| ||||||||||| ||||| || |   ||||||| ||| |||| || |||| ||||||||| || |||||||||||||||| |||| ||| |||||     
T  6655762 agattcatggggttgggaaacacatgagtggagagtcatttctgagcaacttgggtgagtcttgtgaaaccaaaagagaagatcattagtaaaatcaaag 6655861  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||  |||| ||||||||| |||| ||||||||||||||||||||||    
T  6655862 gctaaaggttgtttctctttttggggttagattctagagttgggaaaca 6655910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 6200237 - 6200117
Alignment:
Q  43 ccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag 142  Q
    |||||||  ||||||||  ||||||||  ||||| || | ||||||||| || |||| ||||||| ||| ||||| || ||||||||||||||||||||     
T  6200237 ccttttggggagagatatgtggggttgagaaacacatgagatgagagtccttatgagcaatttggatgaatcttgagataccaaaagagaagatccttat 6200138  T
Q  143 gaaatcaaatggtaagagttg 163  Q
     || ||||||| |||| ||||    
T  6200137 aaagtcaaatgataagggttg 6200117  T

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Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 34112885 - 34112929
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  34112885 gtaacccttttgcatctctttgtaaagaactcattgatagtgaag 34112929  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 40632341 - 40632399
Alignment:
Q  143 gaaatcaaatggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    ||||||||||| |||| |||||||||||||| |||| ||||||||||||||| ||||||    
T  40632341 gaaatcaaatgttaagggttggttctcttttgggggttagattctagagttgagaaaca 40632399  T

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Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 12119607 - 12119648
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  12119607 gtaacccttttgtatctctttgtaaagaactcatttatagtg 12119648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 40630790 - 40630879
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttagg 143  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || ||||||||||||||||||||||    
T  40630790 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagg 40630879  T

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Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 35369767 - 35369656
Alignment:
Q  88 agtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattcta 187  Q
    ||||||||| || || |||| |||||||  ||| | ||||| |||||||| || |||| ||||| | |||| |||||||||||||||||| | |||| ||    
T  35369767 agtctttgtaagcaacttgggtgagtctatggatagcaaaatagaagatctttgggaa-tcaaaggctaagggttggttctcttttggggttggattata 35369669  T
Q  188 gagttgggaaaca 200  Q
    || ||||||||||    
T  35369668 gaattgggaaaca 35369656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 27417274 - 27417199
Alignment:
Q  103 tttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctcttttgggg 177  Q
    ||||| |||||||||  | ||||||| ||||||||||||| |||||||||   |||| ||||||||||||||||||    
T  27417274 tttgggtgagtcttgtaaaaccaaaaaagaagatccttagtgaaatcaaagactaagggttggttctcttttgggg 27417199  T

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Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 16422705 - 16422663
Alignment:
Q  283 aacccttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||    
T  16422705 aacccttttgtatatctttgtaatgaactcatggatagtgaag 16422663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 4588027 - 4588067
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  4588027 gtaacccttttgtatctctttgt-aagaactcattgatagtg 4588067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 5370183 - 5370143
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  5370183 gtaacccttttgtatctctttgt-aagaactcattgatagtg 5370143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 20269533 - 20269616
Alignment:
Q  118 ggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaacactt 203  Q
    |||||| | ||||||||||| ||||||||||||||| ||||| ||| ||| |||||  ||||| ||| ||| ||||||||||||||    
T  20269533 ggagactagaagagaagatctttaggaaatcaaatgctaagaattgattc-cttttatggatatattatag-gttgggaaacactt 20269616  T

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Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 22882851 - 22882810
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| |||| ||||||||||||||| |||||    
T  22882851 gtaacccttttgtatctcttcgtaaagaactcattggtagtg 22882810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 22934515 - 22934474
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| |||| ||||||||||||||| |||||    
T  22934515 gtaacccttttgtatctcttcgtaaagaactcattggtagtg 22934474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 56178737 - 56178697
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  56178737 gtaacccttttgtatctctttgt-aagaactcattgatagtg 56178697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 25723590 - 25723482
Alignment:
Q  43 ccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag 142  Q
    ||||||| |||||| | | ||||||||| ||||| || ||| ||||||||||||||  || ||   ||||| |||| ||||| |||||||||| |||||     
T  25723590 ccttttggagagagcttcgtggggttgggaaacacatcaaaagagagtctttgtgaacaacttaagtgagttttggtagaccgaaagagaagacccttaa 25723491  T
Q  143 gaaatcaaa 151  Q
    | |||||||    
T  25723490 gtaatcaaa 25723482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 33089947 - 33089987
Alignment:
Q  282 taacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||| |||||||| ||| ||||||||||||||||||||||    
T  33089947 taaccattttgtatctctctgtaaagaactcattgatagtg 33089987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 38811342 - 38811302
Alignment:
Q  240 aaatgggtagaaattatgtttgttcttggagagttagttga 280  Q
    ||||||||| |||||| |||||||||||||||||| |||||    
T  38811342 aaatgggtacaaattaagtttgttcttggagagtttgttga 38811302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 44570459 - 44570427
Alignment:
Q  288 ttttgtatttctttgtaaagaactcattgatag 320  Q
    |||||||| ||||||||||||||||||||||||    
T  44570459 ttttgtatctctttgtaaagaactcattgatag 44570427  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 198
Target Start/End: Original strand, 20937452 - 20937607
Alignment:
Q  43 ccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag 142  Q
    |||||||  ||||||| |||| ||||| |||||| || ||| | |||||||||||| ||| |||| ||| |||||||||||||||||||||||| |||||    
T  20937452 ccttttgaggagagattcatgtggttgaaaaacacatcaaaagggagtctttgtgacaaacttgggtgattcttgggagaccaaaagagaagattcttag 20937551  T
Q  143 gaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaa 198  Q
    ||||||||| | |||  |||||||||||||||||  ||||||||||||||| ||||    
T  20937552 gaaatcaaaggataaaggttggttctcttttgggagtagattctagagttgagaaa 20937607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 198
Target Start/End: Original strand, 34795664 - 34795819
Alignment:
Q  43 ccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag 142  Q
    |||||||  ||||||| ||||||||||| | ||| || ||| |||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  34795664 ccttttgaggagagattcatggggttgggatacacatcaaaggagagtttttgtaagaaacttgggtgagtcttgggagaccaaaagagaagatccttag 34795763  T
Q  143 gaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaa 198  Q
     |||||||| | |||| | ||||||||||||| || || |||||| ||||||||||    
T  34795764 aaaatcaaaggctaagggatggttctcttttgtggttaaattctaaagttgggaaa 34795819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 1683349 - 1683478
Alignment:
Q  109 tgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaacacttagatt 208  Q
    ||||||||| |||||||||||||||||||||||| |||||||| | |||| ||||||| |||||||||| |||| |||||||||||||||||| | |  |    
T  1683349 tgagtcttgtgagaccaaaagagaagatccttagaaaatcaaaggctaagggttggttatcttttggggttagaatctagagttgggaaacaccttgtat 1683448  T
Q  209 gagtgaattcattgagtctcttgtttatgg 238  Q
     |||||| |||| |||||||||||| ||||    
T  1683449 cagtgaagtcatcgagtctcttgttcatgg 1683478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 6095961 - 6095813
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   ||||||| |||||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||||    
T  6095961 agattcatggggttgggaaacacatgagtggagagtcatttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaat 6095862  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||  |||||||||||||| |||| ||||||||||||||||||||||    
T  6095861 gctaaaggttggttctcttttgggggttagattctagagttgggaaaca 6095813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 35139079 - 35138975
Alignment:
Q  43 ccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag 142  Q
    |||||||  ||||||| |||| ||||||||||||||| |||||||||||||| |||| || |||  |||||||||||||||||||| |||||||||||||    
T  35139079 ccttttgaggagagattcatgaggttggaaaacaaatcaaatgagagtctttatgagcaacttgaatgagtcttgggagaccaaaatagaagatccttag 35138980  T
Q  143 gaaat 147  Q
    |||||    
T  35138979 gaaat 35138975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 34491057 - 34491167
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||| | |||| |||||||||||||| |||| |||||||||||    
T  34491057 tttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctaga 34491156  T
Q  190 gttgggaaaca 200  Q
    |||||||||||    
T  34491157 gttgggaaaca 34491167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 26323382 - 26323290
Alignment:
Q  109 tgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttg-gggatagattctagagttgggaaaca 200  Q
    |||||||||||||||||||| |||| ||||||||||||||||| | |||| ||||||||||||||| ||| |||||| |||||||||||||||    
T  26323382 tgagtcttgggagaccaaaaaagaatatccttaggaaatcaaaagctaagggttggttctcttttgagggttagattttagagttgggaaaca 26323290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 49199833 - 49199684
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttgg-ttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaa 151  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| |||||||||| || ||||||||||||||||||||| |||||||||    
T  49199833 agattcatggggttgggaaacatatgagtggagagtcttttgtgagcaacttgggttgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaa 49199734  T
Q  152 tggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
     | |||  |||||||||||||| |||| ||||||||||||||||||||||    
T  49199733 ggctaatggttggttctcttttgggggttagattctagagttgggaaaca 49199684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 36018657 - 36018805
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||| ||| ||||| || ||  ||||||| |||||||| || |||| ||||||||| || ||||||||||||||||||||| |||||||||     
T  36018657 agatccatggggatgggaaacacatgaatggagagtcatttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 36018756  T
Q  153 ggtaagagttggttctcttttgggg-atagattctagagttgggaaaca 200  Q
    | || |  |||||||||||||||||  ||||||||||||||||||||||    
T  36018757 gctatggattggttctcttttggggtttagattctagagttgggaaaca 36018805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 40913145 - 40913293
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   ||||||| |||||||| || |||| ||||||||| || | ||||||||||||||||||| ||||| |||     
T  40913145 agattcatggggttgggaaacacatgagtggagagtcatttgtgagcaaattgggtgagtcttgtgaaagcaaaagagaagatccttagtgaaattaaag 40913244  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  40913245 gttaagggttggttctcttttgggggttagattctagagttgggaaaca 40913293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 46860315 - 46860426
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaaga--gttggttctctttt-ggggatagattctag 188  Q
    |||||||| || |||| ||||||||| || ||||||||||||||||||||||||||||||   |||||  |||||||||||||| |||| ||||||||||    
T  46860315 tttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttaggaaatcaaagactaagagggttggttctcttttgggggttagattctag 46860414  T
Q  189 agttgggaaaca 200  Q
    ||||| ||||||    
T  46860415 agttgagaaaca 46860426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 4569757 - 4569905
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || ||||||||||| |||| |||| |||||||||     
T  4569757 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagatgatctttagtgaaatcaaag 4569856  T
Q  153 ggtaagagttggttctcttttgg-ggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||||| || |||||||||||||||| |||||    
T  4569857 gctaagggttggttctcttttggtggttagattctagagttggaaaaca 4569905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 200
Target Start/End: Original strand, 30235936 - 30236079
Alignment:
Q  60 catggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaa 157  Q
    ||||||||||||||||| |  |   ||||||| |||||||| || |||| ||||||||| || ||||||||||||||||||||| |||||| || | |||    
T  30235936 catggggttggaaaacacaagagtggagagtcatttgtgagcaagttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcgaaggctaa 30236035  T
Q  158 gagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
       ||||||||||||| |||| ||||||||||||||||||||||    
T  30236036 tgattggttctcttttgggggttagattctagagttgggaaaca 30236079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 54593511 - 54593658
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||| ||||||||| || |   |||||||||| ||||| || |||  ||||||||| || ||||||| ||||||||||||| |||||||||     
T  54593511 agattcatggggatggaaaacacatgagtggagagtcttttgtgagcaacttgagtgagtcttgtgaaaccaaaatagaagatccttagtgaaatcaaag 54593610  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| ||| |||||||||| |||| ||||||||||||||||||||||    
T  54593611 gctaagggtt-gttctcttttgggggttagattctagagttgggaaaca 54593658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 47304058 - 47304205
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatg 153  Q
    |||| ||||||||||| ||||| || |   |||||| |||||||| || || | |||||||||  | |||||||||||| |||||||| |||||||||      
T  47304058 agattcatggggttgggaaacacatgagtggagagtttttgtgagcaacttaggtgagtcttgtaaaaccaaaagagaatatccttagtgaaatcaaaaa 47304157  T
Q  154 gtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
     |||| |||||||||||||| |||| |||||||||||||||| |||||    
T  47304158 ctaagggttggttctcttttgggggttagattctagagttggaaaaca 47304205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 5434242 - 5434092
Alignment:
Q  52 gagagatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaa 150  Q
    ||||||| ||||||||| | ||||| || |   |||||||||| ||||| || |||| |||||||||||| |||||||||||||||||||| | ||||||    
T  5434242 gagagattcatggggttaggaaacacatgagtggagagtcttttgtgagcaagttgggtgagtcttgggaaaccaaaagagaagatccttatgtaatcaa 5434143  T
Q  151 atggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    |   |||   ||| ||||||||| |||| |||||| |||||||||||||||    
T  5434142 agactaaagattgattctcttttgggggttagattatagagttgggaaaca 5434092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 39127413 - 39127499
Alignment:
Q  114 cttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaaca 200  Q
    |||| ||||||||||||||| | ||||||||||||||| | |||| ||| ||||||||||| || || ||||||||||| |||||||    
T  39127413 cttgagagaccaaaagagaatacccttaggaaatcaaaggctaagggttagttctcttttgtggttaaattctagagtttggaaaca 39127499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 55302289 - 55302179
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctcttttg-gggatagattctaga 189  Q
    |||||||| || |||  ||||||||| || ||||||||||||||||||||| ||||||||| | || | |||||||||||||||  || |||||| ||||    
T  55302289 tttgtgagcaacttgagtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaggggttggttctcttttgtaggttagattataga 55302190  T
Q  190 gttgggaaaca 200  Q
    |||||||||||    
T  55302189 gttgggaaaca 55302179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 41819846 - 41819740
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctctttt-ggggatagattctagag 190  Q
    |||||||| || |||  ||||||||  || |||||||||||||||| ||| ||||||||| | |||| |||||||||||||| | || ||||||||||||    
T  41819846 tttgtgagcaacttgagtgagtcttatgaaaccaaaagagaagatctttatgaaatcaaa-gctaagggttggttctcttttagcggttagattctagag 41819748  T
Q  191 ttgggaaa 198  Q
    ||||||||    
T  41819747 ttgggaaa 41819740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 43404095 - 43403975
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||||||||| || |   ||||||| |||| ||| || |||| ||||||||| || || |||||||||||||||||| |||||||||     
T  43404095 agattcatggggttggaaaacacatgagtggagagtcatttgggagcaacttgggtgagtcttgtgaaactaaaagagaagatccttagtgaaatcaaag 43403996  T
Q  153 ggtaagagttggttctctttt 173  Q
    | || | ||||||||||||||    
T  43403995 gctatgggttggttctctttt 43403975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 2020208 - 2020250
Alignment:
Q  282 taacccttttgtatttctttgtaaagaactcattgatagtgaa 324  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  2020208 taaccgttttgtatttctttgtaaagaactcattgatattgaa 2020250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 25491063 - 25491024
Alignment:
Q  286 ccttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  25491063 ccttttgtatctctttgtaaagaaatcattgatagtgaag 25491024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 322
Target Start/End: Complemental strand, 35138800 - 35138765
Alignment:
Q  287 cttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||| ||||||||||||||||||||||||||    
T  35138800 cttttgtatctctttgtaaagaactcattgatagtg 35138765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 43402095 - 43402032
Alignment:
Q  111 agtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt 173  Q
    ||||||| || ||||||||||||||||||||| ||||||||| | || | ||||||||||||||    
T  43402095 agtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctatgggttggttctctttt 43402032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 238
Target Start/End: Original strand, 2020120 - 2020150
Alignment:
Q  208 tgagtgaattcattgagtctcttgtttatgg 238  Q
    |||||||||||||||||||||||||||||||    
T  2020120 tgagtgaattcattgagtctcttgtttatgg 2020150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 20937724 - 20937762
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgata 319  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  20937724 gtaacccttttgtatctctttgaaaagaactcattgata 20937762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 8166611 - 8166570
Alignment:
Q  239 taaatgggtagaaattatgtttgttcttggagagttagttga 280  Q
    |||||| |||||||||| |||||||||||||||||| |||||    
T  8166611 taaatgagtagaaattaggtttgttcttggagagtttgttga 8166570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 19683989 - 19683949
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  19683989 gtaacccttttgtatctctttgt-aagaactcattgatagtg 19683949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 37408526 - 37408566
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  37408526 gtaacccttttgtatctctttgt-aagaactcattgatagtg 37408566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 40519291 - 40519258
Alignment:
Q  288 ttttgtatttctttgtaaagaactcattgatagt 321  Q
    |||||||| |||||||||||||||||||||||||    
T  40519291 ttttgtatctctttgtaaagaactcattgatagt 40519258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 45095231 - 45095271
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  45095231 gtaacccttttgtatctctttgt-aagaactcattgatagtg 45095271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 50432901 - 50432848
Alignment:
Q  89 gtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag 142  Q
    ||||||||||| || |||||||| ||||| |||||||||| || ||||||||||    
T  50432901 gtctttgtgagcaacttggttgaatcttgagagaccaaaaaaggagatccttag 50432848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 8166556 - 8166512
Alignment:
Q  282 taacccttttgtatttctttgtaaagaactcattgatagtgaagc 326  Q
    ||||| |||||||| |||||||||||||||  |||||||||||||    
T  8166556 taacctttttgtatctctttgtaaagaacttgttgatagtgaagc 8166512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 24635276 - 24635312
Alignment:
Q  244 gggtagaaattatgtttgttcttggagagttagttga 280  Q
    |||||||||||| |||||||||||||||||| |||||    
T  24635276 gggtagaaattaagtttgttcttggagagtttgttga 24635312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 26323174 - 26323130
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    |||||| |||||||| |||| ||||| ||||||||||||||||||    
T  26323174 gtaacctttttgtatatcttggtaaaaaactcattgatagtgaag 26323130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 41135624 - 41135773
Alignment:
Q  52 gagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaa 151  Q
    ||||||| ||||||||||| ||||| || ||| |||||||||||||||||| |||| |||||||| ||| |||||||||||||||| || |||||| |||    
T  41135624 gagagattcatggggttgggaaacacatcaaaggagagtctttgtgagaaacttgggtgagtcttaggaaaccaaaagagaagatcatttggaaattaaa 41135723  T
Q  152 tggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
     | ||||  ||||||||||||| |||| ||||||||||||||| ||||||    
T  41135724 ggctaaggattggttctcttttgggggttagattctagagttgagaaaca 41135773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 34603420 - 34603529
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttgg-ggatagattctagag 190  Q
    |||||||| || |||| ||||||||| || |||||||||||||||||||||||||||||| | |||| |||||||||||||||| || ||||||||||||    
T  34603420 tttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttaggaaatcaaaggctaagggttggttctcttttggaggttagattctagag 34603519  T
Q  191 ttgggaaaca 200  Q
    ||||||||||    
T  34603520 ttgggaaaca 34603529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 11348504 - 11348652
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||||||||| || |   ||||||| |||||||| || |||| ||||||||| || ||||||||||||||||||||| |||||||||     
T  11348504 agattcatggggttggaaaacacatgagtggagagtcatttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 11348603  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  11348604 gctaagggttggttctcttttgggggttagattctagagttgggaaaca 11348652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 34602663 - 34602557
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttgg-ggatagattctagag 190  Q
    |||||||| || |||| ||||||||| || |||||||||||||||||||||||||||||| | |||| |||||||||||||||| || ||||||||||||    
T  34602663 tttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttaggaaatcaaaggctaagggttggttctcttttggaggttagattctagag 34602564  T
Q  191 ttgggaa 197  Q
    |||||||    
T  34602563 ttgggaa 34602557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 47114977 - 47115125
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatcctt-aggaaatcaaat 152  Q
    |||| ||||||||||| ||||| || ||  |||||||||| ||||| || |||| ||||||||| || ||||||||||||||||||| | |||||||||     
T  47114977 agattcatggggttgggaaacacatgaatggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttaatgaaatcaaag 47115076  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  47115077 gctaagggttggttctcttttgggggttagattctagagttgggaaaca 47115125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 193455 - 193565
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||| | |||| |||||||||||||| |||| |||||||||||    
T  193455 tttgtgagcaacttggatgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctaga 193554  T
Q  190 gttgggaaaca 200  Q
    |||||||||||    
T  193555 gttgggaaaca 193565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 7482592 - 7482449
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatg 153  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || || ||||||||||||||||||||||||||| |    
T  7482592 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaacaaaaagagaagatccttaggaaatcaaa-g 7482494  T
Q  154 gtaagagttggttctctttt-ggggatagattctagagttgggaa 197  Q
     |||| |||||||||||||| |||| |||||||||||||||||||    
T  7482493 ctaagggttggttctcttttgggggttagattctagagttgggaa 7482449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 37033397 - 37033287
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctc-ttttggggatagattctaga 189  Q
    |||||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||| | || | |||||||||| |||||||| |||||||||||    
T  37033397 tttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctatgggttggttctctttttggggttagattctaga 37033298  T
Q  190 gttgggaaaca 200  Q
    |||||||||||    
T  37033297 gttgggaaaca 37033287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 42298337 - 42298189
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   ||||||| |||| ||| || |||| ||||||||| || |||||||||||||||||| || |||||||||     
T  42298337 agattcatggggttgggaaacacatgagtggagagtcatttgcgagcaacttgggtgagtcttgtgaaaccaaaagagaagatcctaagtgaaatcaaag 42298238  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | ||||||||||||||||||| |||| ||||||||||||||| ||||||    
T  42298237 gctaagagttggttctcttttgggggttagattctagagttgtgaaaca 42298189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 13547446 - 13547303
Alignment:
Q  60 catggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaa 157  Q
    ||||||||||||||||| || |   |||||||||| ||||| || |||| ||| ||||| || ||||||||||||||| ||||| ||||||||| | |||    
T  13547446 catggggttggaaaacacatgagtggagagtcttttgtgagcaacttgggtgaatcttgtgaaaccaaaagagaagatacttagtgaaatcaaaggctaa 13547347  T
Q  158 gagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||||||||||||| |||| ||||||||||| ||||||||||    
T  13547346 gggttggttctcttttgggggttagattctagatttgggaaaca 13547303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 13549357 - 13549214
Alignment:
Q  60 catggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaa 157  Q
    ||||||||||||||||| || |   |||||||||| ||||| || |||| ||| ||||| || ||||||||||||||| ||||| ||||||||| | |||    
T  13549357 catggggttggaaaacacatgagtggagagtcttttgtgagcaacttgggtgaatcttgtgaaaccaaaagagaagatacttagtgaaatcaaaggctaa 13549258  T
Q  158 gagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||||||||||||| |||| ||||||||||| ||||||||||    
T  13549257 gggttggttctcttttgggggttagattctagatttgggaaaca 13549214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 37879268 - 37879125
Alignment:
Q  60 catggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaa 157  Q
    ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || | ||||||||||||||||||| ||||||||| | |||    
T  37879268 catggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaatcaaaagagaagatccttagtgaaatcaaaggctaa 37879169  T
Q  158 gagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    |  ||||||||||||| |||| ||||||||||||||||||||||    
T  37879168 ggattggttctcttttgggggttagattctagagttgggaaaca 37879125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 29136091 - 29136201
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||| | |||| ||| |||||||||| |||| |||||||||||    
T  29136091 tttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttagttctcttttgggggttagattctaga 29136190  T
Q  190 gttgggaaaca 200  Q
    |||| ||||||    
T  29136191 gttgtgaaaca 29136201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 37168103 - 37168251
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || || |||||||||||||||||| |||||||||     
T  37168103 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaactaaaagagaagatccttagtgaaatcaaag 37168202  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||  |||| ||||||||| |||| ||||||||||||||||||||||    
T  37168203 gctaaaggttgattctcttttgggggttagattctagagttgggaaaca 37168251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 47255647 - 47255556
Alignment:
Q  109 tgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctagagttgggaaa 198  Q
    ||||||||| || ||||||||||||||||||||| |||||||||   |||| |||||||||||||| |||| ||||||||||||||||||||    
T  47255647 tgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaagactaagggttggttctcttttgggggttagattctagagttgggaaa 47255556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 28242232 - 28242342
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| ||||||||| || |||||||||||| |||||||| ||||||||| | || | |||||||||||||| |||| |||||||||||    
T  28242232 tttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaatatccttagtgaaatcaaaggctatgggttggttctcttttaggggttagattctaga 28242331  T
Q  190 gttgggaaaca 200  Q
    ||||| |||||    
T  28242332 gttggaaaaca 28242342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 19752529 - 19752637
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || || | ||||||||| || ||||||||||||||||||||| ||||||||| | |||   ||||||||||||| |||| |||||||||||    
T  19752529 tttgtgagcaacttagatgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaatgattggttctcttttgggggttagattctaga 19752628  T
Q  190 gttgggaaa 198  Q
    |||||||||    
T  19752629 gttgggaaa 19752637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 31926030 - 31925926
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| |||| |||| || ||||||||||||||||||||| ||||||||| | |||  |||||||||||||| |||| |||||||||||    
T  31926030 tttgtgagcaacttgggtgagacttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaatggttggttctcttttgggggttagattctaga 31925931  T
Q  190 gttgg 194  Q
    |||||    
T  31925930 gttgg 31925926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 3331428 - 3331506
Alignment:
Q  122 accaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaacac 201  Q
    |||||||||| ||||||||||||||||||| | |||| ||| ||| |||||||||| | |||||||||||||||||||||    
T  3331428 accaaaagaggagatccttaggaaatcaaaggctaagggtttgtt-tcttttggggttggattctagagttgggaaacac 3331506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 19754297 - 19754448
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag----gaaatca 149  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || |||||||||||| |||||||     |||||||    
T  19754297 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaaaatccttataagtgaaatca 19754396  T
Q  150 aatggtaagagttggttctcttttggggat-agattctagagttgggaaaca 200  Q
    || | |||  |||||||||||||||||| | |||||||||||||||||||||    
T  19754397 aaggataatggttggttctcttttgggggttagattctagagttgggaaaca 19754448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 12318825 - 12318720
Alignment:
Q  72 aaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctctt 171  Q
    ||||| || ||| |||||| ||| |||| || |||| |||||||||||||||||||| |||| ||| || |||||||||| | |||| ||||||||||||    
T  12318825 aaacacatcaaaggagagtttttatgagcaacttgggtgagtcttgggagaccaaaatagaaaatcttttggaaatcaaaggctaagggttggttctctt 12318726  T
Q  172 ttgggg 177  Q
    | ||||    
T  12318725 tggggg 12318720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 25651931 - 25652039
Alignment:
Q  94 tgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttgggga--tagattctagagt 191  Q
    |||||| || |||| ||| |||||||| | |||||| |||||||||||| |||||||||  ||||| |||||||||||||  | |  |||||||||||||    
T  25651931 tgtgagcaacttgggtgaatcttgggaaagcaaaagtgaagatccttagaaaatcaaatattaagaattggttctcttttatgaaggtagattctagagt 25652030  T
Q  192 tgggaaaca 200  Q
    |||||||||    
T  25652031 tgggaaaca 25652039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 6068449 - 6068512
Alignment:
Q  104 ttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttc 167  Q
    |||||||| ||||| |||| | |||||||||||||||||||||||||| | |||||||||||||    
T  6068449 ttggttgaatcttgagagatcgaaagagaagatccttaggaaatcaaaggctaagagttggttc 6068512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 16914274 - 16914231
Alignment:
Q  282 taacccttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  16914274 taacccttttgtatctctttgtaaagaactcattgatagtgaag 16914231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 9109766 - 9109666
Alignment:
Q  52 gagagatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaa 150  Q
    ||||||| |||| |||||| | ||| || |||||||||||||| ||||| ||||||| |||||||||||| | ||||| |||||||| | ||| ||||||    
T  9109766 gagagattcatgaggttgggagacacatcaaatgagagtcttttgtgagcaatttggatgagtcttgggaaatcaaaatagaagatcatgaggtaatcaa 9109667  T
Q  151 a 151  Q
    |    
T  9109666 a 9109666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 22079159 - 22079274
Alignment:
Q  85 gagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctctttt-ggggatagat 183  Q
    ||||||||||||||| || || | |||||||||| | ||||||| | ||||| |||| ||||||||| | |||| | | |||||||||| |||| |||||    
T  22079159 gagagtctttgtgagcaacttaggtgagtcttggcaaaccaaaatataagatgcttatgaaatcaaaggctaag-gattgttctcttttgggggttagat 22079257  T
Q  184 tctagagttgggaaaca 200  Q
    |||||||||| ||||||    
T  22079258 tctagagttgagaaaca 22079274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 16216786 - 16216712
Alignment:
Q  125 aaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaaca 200  Q
    ||||||||||||||||||||||||||| | || ||||||||| |  ||| ||| ||||||||||||||| ||||||    
T  16216786 aaaagagaagatccttaggaaatcaaaggctacgagttggtt-tagtttagggttagattctagagttgagaaaca 16216712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 4535758 - 4535652
Alignment:
Q  125 aaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaacacttagattgagtgaattcattgag 224  Q
    ||||| ||||||||||||||||||||| | |||  |||||||  |||| |||| ||||||| | ||||||||||||| | |  |||||||| ||||||||    
T  4535758 aaaagtgaagatccttaggaaatcaaaggctaaaggttggtt-actttcggggttagattcaatagttgggaaacacattgggtgagtgaaatcattgag 4535660  T
Q  225 tctcttgtt 233  Q
     ||||||||    
T  4535659 -ctcttgtt 4535652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 22079384 - 22079422
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgata 319  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  22079384 gtaaccattttgtatctctttgtaaagaactcattgata 22079422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 4535574 - 4535541
Alignment:
Q  288 ttttgtatttctttgtaaagaactcattgatagt 321  Q
    |||||||| |||||||||||||||||||||||||    
T  4535574 ttttgtatctctttgtaaagaactcattgatagt 4535541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 5459980 - 5460013
Alignment:
Q  288 ttttgtatttctttgtaaagaactcattgatagt 321  Q
    |||| |||||||||||||||||||||||||||||    
T  5459980 ttttatatttctttgtaaagaactcattgatagt 5460013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 6808520 - 6808561
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||    
T  6808520 gtaactcttttgtatctctttgtaaagaactcatttatagtg 6808561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 9109520 - 9109479
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| |||||||||||||| | |||||||||    
T  9109520 gtaacccttttgtatctctttgtaaagaacacgttgatagtg 9109479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 3460764 - 3460804
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagt 321  Q
    ||||||||||||||| ||||||||||||||  |||||||||    
T  3460764 gtaacccttttgtatatctttgtaaagaacatattgatagt 3460804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 16914329 - 16914297
Alignment:
Q  240 aaatgggtagaaattatgtttgttcttggagag 272  Q
    ||||||||| |||||||||||||||||||||||    
T  16914329 aaatgggtaaaaattatgtttgttcttggagag 16914297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 25652154 - 25652198
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    ||||| || |||||| |||||||||||||||| ||||||||||||    
T  25652154 gtaactctcttgtatctctttgtaaagaactctttgatagtgaag 25652198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 6431777 - 6431925
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||||||||| || |    |||||| |||||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||||    
T  6431777 agattcatggggttggaaaacacatgagtgtagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaat 6431876  T
Q  153 ggtaagagttggttctcttttg-gggatagattctagagttgggaaaca 200  Q
    | |||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  6431877 gctaagggttggttctcttttgagggttagattctagagttgggaaaca 6431925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 2390088 - 2390236
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||||||||| || |   || |||| |||||||| || |||| ||||||||| || ||||||||||||||||||||| |||||||||     
T  2390088 agattcatggggttggaaaacacatgagtggatagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 2390187  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  2390188 gctaagggttggttctcttttgggggttagattctagagttgggaaaca 2390236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 2361328 - 2361186
Alignment:
Q  60 catggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaa 157  Q
    ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||  || ||||||||||||||||||||| ||||||||| | |||    
T  2361328 catggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttatgaaaccaaaagagaagatccttagtgaaatcaaaggctaa 2361229  T
Q  158 gagttggttctcttttggggatagattctagagttgggaaaca 200  Q
    | ||||||||||||||| || ||||||||||||||||||||||    
T  2361228 gggttggttctcttttgaggttagattctagagttgggaaaca 2361186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 48599696 - 48599548
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||||||| | || |   |||||||||| ||||| || |||| ||||||||| || ||||||||||||||||||||| |||||||||     
T  48599696 agattcatggggttggaaaaaacatgagtagagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 48599597  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| || |||||||||||||||||||    
T  48599596 gctaagggttggttctcttttgggggttatattctagagttgggaaaca 48599548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 6360236 - 6360126
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| ||||||||| || | ||||||||||||||||||| ||||||||| | |||| |||||||||||||| |||| |||||||||||    
T  6360236 tttgtgagcaacttgggtgagtcttgtgaaatcaaaagagaagatccttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctaga 6360137  T
Q  190 gttgggaaaca 200  Q
    |||||||||||    
T  6360136 gttgggaaaca 6360126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 34311073 - 34310932
Alignment:
Q  60 catggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaa 157  Q
    ||||||| ||||||||| || |   |||||||||| ||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||| | |||    
T  34311073 catggggatggaaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaa 34310974  T
Q  158 gagttggttctctttt-ggggatagattctagagttgggaaa 198  Q
      |||||||||||||| |||| ||||||||||||||||||||    
T  34310973 aggttggttctcttttgggggttagattctagagttgggaaa 34310932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 60 - 200
Target Start/End: Original strand, 29608547 - 29608690
Alignment:
Q  60 catggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaa 157  Q
    ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || ||||||| ||||||| ||||| ||||||||| | |||    
T  29608547 catggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaatagaagattcttagtgaaatcaaaggctaa 29608646  T
Q  158 gagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||||||||||||| |||| ||||||||||||||||||||||    
T  29608647 gggttggttctcttttgggggttagattctagagttgggaaaca 29608690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 4512714 - 4512604
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||| | |||| ||| |||||||||| |||| || ||||||||    
T  4512714 tttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttagttctcttttgggggttatattctaga 4512615  T
Q  190 gttgggaaaca 200  Q
    |||||||||||    
T  4512614 gttgggaaaca 4512604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 3258852 - 3258948
Alignment:
Q  104 ttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctc-ttttggggatagattctagagttgggaaaca 200  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||||   |||| |||||||||| ||| |||| ||||||||||||||||||||||    
T  3258852 ttgggtgagtcttgtgaaaccaaaagagaagatccttaggaaatcaaa-cctaagggttggttctcatttgggggttagattctagagttgggaaaca 3258948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 4509068 - 4508920
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   ||||||| |||||||| || || | ||||||||| || ||||||||| ||||||||||| |||||||||     
T  4509068 agattcatggggttgggaaacacatgagtggagagtcatttgtgagcaactttggtgagtcttgtgaaaccaaaagataagatccttagtgaaatcaaag 4508969  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | ||||  |||||||||||||  ||| ||||||||||||||||||||||    
T  4508968 gctaaggattggttctcttttatgggttagattctagagttgggaaaca 4508920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 4510910 - 4510762
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   ||||||| |||||||| || || | ||||||||| || ||||||||||||||||||||| |||||||||     
T  4510910 agattcatggggttgggaaacacatgagtggagagtcatttgtgagcaactttggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 4510811  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||   |||||||||||||  ||| ||||||||||||||||||||||    
T  4510810 gctaacgattggttctcttttatgggttagattctagagttgggaaaca 4510762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 43363747 - 43363667
Alignment:
Q  83 atgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttg 163  Q
    ||||||||| ||||||| ||||||| ||| ||||| ||||||||||||||||||| ||||||||| ||||| |||| ||||    
T  43363747 atgagagtccttgtgagcaatttgggtgaatcttgagagaccaaaagagaagatctttaggaaattaaatgctaagggttg 43363667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 5116429 - 5116551
Alignment:
Q  43 ccttttgtagagagatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatcctta 141  Q
    ||||||| |||||||| ||| || |||| |||||  | ||||||| ||| ||||||| ||| || | |||||||||||  |||||||||||||||||| |    
T  5116429 ccttttggagagagattcattggattggtaaacacttcaaatgagggtcatttgtgataaacttaggtgagtcttgggtaaccaaaagagaagatcctca 5116528  T
Q  142 ggaaatcaaatggtaagagttgg 164  Q
    |||||||||| | ||||||||||    
T  5116529 ggaaatcaaaggttaagagttgg 5116551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 8359680 - 8359531
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || |||||||||||| |||||||| |||||||||     
T  8359680 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttggatgagtcttgtgaaaccaaaagagaaaatccttagtgaaatcaaag 8359581  T
Q  153 ggtaagagttggttctcttttgggg--atagattctagagttgggaaaca 200  Q
    | |||||||||||| | ||||||||   |||||||| ||||||| |||||    
T  8359580 gctaagagttggttattttttgggggtttagattcttgagttggaaaaca 8359531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 22269809 - 22269921
Alignment:
Q  85 gagagtct-ttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatag 181  Q
    |||||||| ||| |||||| |||| ||||||||| || ||||||| ||||||||||||| ||||||| | | || | |||||||||||||| |||| |||    
T  22269809 gagagtctattgagagaaacttgggtgagtcttgtgaaaccaaaatagaagatccttagtgaaatcataggctatgggttggttctcttttgggggttag 22269908  T
Q  182 attctagagttgg 194  Q
    |||||||||||||    
T  22269909 attctagagttgg 22269921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 22328722 - 22328612
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctctttt--ggggatagattctaga 189  Q
    |||||||| || |||| ||| |||||||| || ||||||||| ||||||| | ||||||| | |||| ||||||||||||||  |||| ||||| ||| |    
T  22328722 tttgtgagcaacttgggtgaatcttgggaaactaaaagagaatatccttatgtaatcaaaagctaagggttggttctcttttggggggttagatcctaaa 22328623  T
Q  190 gttgggaaaca 200  Q
    |||||||||||    
T  22328622 gttgggaaaca 22328612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 23794154 - 23794049
Alignment:
Q  87 gagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattct 186  Q
    ||||||||||||| ||||||| ||| || |  ||||||||||||| |||||||||| |||||||| | |||  ||||||||  ||||| || ||||||||    
T  23794154 gagtctttgtgagcaatttgggtgaatcgtaagagaccaaaagaggagatccttagaaaatcaaaggctaatggttggttc-attttgtggttagattct 23794056  T
Q  187 agagttg 193  Q
    |||||||    
T  23794055 agagttg 23794049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 5116672 - 5116715
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaa 324  Q
    |||| |||||||||| ||||||||||||||||||||||||||||    
T  5116672 gtaaaccttttgtatctctttgtaaagaactcattgatagtgaa 5116715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 22552736 - 22552683
Alignment:
Q  113 tcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggtt 166  Q
    |||||||||||||||||||||||| | |||||||||||| | |||| |||||||    
T  22552736 tcttgggagaccaaaagagaagattcataggaaatcaaaggataagggttggtt 22552683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 36574616 - 36574575
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  36574616 gtaacccttttatatctctttgtaaagaactcattgatagtg 36574575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 3904717 - 3904675
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtga 323  Q
    ||||| |||||| || |||||||||||||||||||||||||||    
T  3904717 gtaacacttttgcatctctttgtaaagaactcattgatagtga 3904675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 1360502 - 1360375
Alignment:
Q  67 ttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggtt 166  Q
    |||||||||| || ||| |||||| |||| ||| || |||  |||||||||| | |||||||||||| ||  || |||||||||| | || |  ||||||    
T  1360502 ttggaaaacacatcaaaggagagt-tttgcgagcaacttgagtgagtcttggaaaaccaaaagagaatatttttgggaaatcaaaggatatggattggtt 1360404  T
Q  167 ctctttt--ggggatagattctagagttg 193  Q
    |||||||  |||| |||||||||||||||    
T  1360403 ctcttttggggggttagattctagagttg 1360375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 35853982 - 35854022
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  35853982 gtaacccttttgtatctctttgt-aagaactcattgatagtg 35854022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 5043433 - 5043581
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| ||||||| ||||||||| || ||||||||||||||||||||| | |||||||     
T  5043433 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaatttgggtgagtcttgtgaaaccaaaagagaagatccttagtggaatcaaag 5043532  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  5043533 gctaagagttggttctcttttgggggttagattctagagttgggaaaca 5043581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 21593472 - 21593618
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatg 153  Q
    |||| ||||||||||||||||| || |   ||||||| ||| |||| || |||| ||||||||| || |||||||||||||||||||||||||||||| |    
T  21593472 agattcatggggttggaaaacacatgagtggagagtcatttttgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttaggaaatcaaa-g 21593570  T
Q  154 gtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
     |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  21593571 ctaagggttggttctcttttgggggttagattctagagttgggaaaca 21593618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 2973301 - 2973153
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || ||   |||||| |||||||  || |||| ||||||||| || ||||||||||||||||||||| |||||||||     
T  2973301 agattcatggggttgggaaacacatgaatgcagagtcatttgtgaacaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 2973202  T
Q  153 ggtaagagttggttctcttttgggga-tagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  2973201 gctaagggttggttctcttttagggattagattctagagttgggaaaca 2973153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 603405 - 603294
Alignment:
Q  91 ctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctag 188  Q
    ||||||||| || |||| ||||||||| || ||||||||||||||||||||| ||||||||| | |||  |||||||||||||| |||| ||||||||||    
T  603405 ctttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaatggttggttctcttttgggggttagattctag 603306  T
Q  189 agttgggaaaca 200  Q
    ||||||||||||    
T  603305 agttgggaaaca 603294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 22425130 - 22425042
Alignment:
Q  111 agtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaaca 200  Q
    ||||||| || |||||||||||| ||||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||||||||    
T  22425130 agtcttgtgaaaccaaaagagaatatccttaggaaatcaaa-gctaagggttggttctcttttggggttagattatagagttgggaaaca 22425042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 17762795 - 17762943
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| | ||| || |||| ||||||||| || || |||||||||||||||||| |||||||||     
T  17762795 agattcatggggttgggaaacacatgagtggagagtcttttgggagcaacttgggtgagtcttgtgaaacaaaaagagaagatccttagtgaaatcaaag 17762894  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  17762895 gctaagggttggttctcttttgggggttagattctagagttgggaaaca 17762943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 3809070 - 3808923
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   ||||||| |||||||| || |||| |||||||||  | |||||||||||| |||||||| |||||||||     
T  3809070 agattcatggggttgggaaacacatgagtggagagtcatttgtgagcaacttgggtgagtcttgtaaaaccaaaagagaaaatccttagtgaaatcaaag 3808971  T
Q  153 ggtaagagttggttctcttttggggatagattctagagttgggaaaca 200  Q
    | |||| ||||||||| ||| |||| ||||||||||||||||||||||    
T  3808970 gctaagggttggttctttttgggggttagattctagagttgggaaaca 3808923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 26830537 - 26830338
Alignment:
Q  4 ggagaagcaaaggaggagactcttgggaaat-gatttgtaccttttgtagagagatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaa 101  Q
    |||||| |||| |||||| |||||||||||  | || || ||||||| ||| |||| ||||||||||| ||||| || |    |||||| |||||||| |    
T  26830537 ggagaaccaaaagaggagtctcttgggaaaaaggttggtgccttttggaga-agattcatggggttgggaaacagatgagcgcagagtcatttgtgagca 26830439  T
Q  102 atttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctagagttgggaaac 199  Q
    | ||||  |||||||| || ||||||||||||||| ||||| ||||||||| | |||| |||||||||||||| |||| |||||||||||||||| ||||    
T  26830438 acttgggcgagtcttgtgaaaccaaaagagaagattcttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctagagttggaaaac 26830339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 11660450 - 11660559
Alignment:
Q  90 tctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctaga 189  Q
    |||||||||| ||||||| ||| ||||||||||||||||||| | | || |||||| ||||| | |||| ||||||||  |||||||| |||||||||||    
T  11660450 tctttgtgagcaatttggatgaatcttgggagaccaaaagaggataaccataggaattcaaaggctaagggttggttc-attttggggttagattctaga 11660548  T
Q  190 gttgggaaaca 200  Q
    ||| |||||||    
T  11660549 gttcggaaaca 11660559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 5741114 - 5741005
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggtt-ctcttttggggatagattctagag 190  Q
    |||||||| ||||||| ||| ||||| || || ||||| |||||||||||| |||||||| | |||| ||||||| || ||  |||| ||||||||| ||    
T  5741114 tttgtgagcaatttgggtgaatcttgagaaacaaaaagtgaagatccttagtaaatcaaaggctaagggttggttacttttggggggttagattctaaag 5741015  T
Q  191 ttgggaaaca 200  Q
    |||| |||||    
T  5741014 ttggaaaaca 5741005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 25073636 - 25073677
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  25073636 gtaacccttttgtatctctatgtaaagaactcattgatagtg 25073677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 25073457 - 25073521
Alignment:
Q  137 ccttaggaaatcaaatggtaagagttggttctcttttggggat-agattctagagttgggaaaca 200  Q
    ||||||||||| ||| | |||| |||| ||||||||||||| | |||||||||||||||||||||    
T  25073457 ccttaggaaattaaaggctaagggttgattctcttttgggggttagattctagagttgggaaaca 25073521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 25072989 - 25073076
Alignment:
Q  53 agagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatcctt 140  Q
    |||||| ||| ||||| | ||||| || ||| |||||||||| || |||| |||| |  ||||||||| |||||||||||||||||||    
T  25072989 agagattcatagggtttggaaacacatcaaaggagagtctttatgtgaaacttggataggtcttgggaaaccaaaagagaagatcctt 25073076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 5406300 - 5406260
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  5406300 gtaacccttttgtatctctttgt-aagaactcattgatagtg 5406260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 5410625 - 5410585
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  5410625 gtaacccttttgtatctctttgt-aagaactcattgatagtg 5410585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 5413494 - 5413454
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  5413494 gtaacccttttgtatctctttgt-aagaactcattgatagtg 5413454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 28137508 - 28137468
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||| ||||||||||||||| ||||||||||||||||||    
T  28137508 gtaacccatttgtatttctttgt-aagaactcattgatagtg 28137468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 31404775 - 31404735
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  31404775 gtaacccttttgtatctctttgt-aagaactcattgatagtg 31404735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 5740098 - 5740054
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    |||| |||||||||||||||||||||||||| | ||||| |||||    
T  5740098 gtaaaccttttgtatttctttgtaaagaacttactgataatgaag 5740054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 14689754 - 14689626
Alignment:
Q  72 aaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctctt 171  Q
    ||||| |||||| |||||| |||||||| || || | | |||||||||| ||||||||| ||||||||||| |||||||| | || | ||||||||||||    
T  14689754 aaacacataaaaggagagtatttgtgagcaacttagataagtcttgggacaccaaaagaaaagatccttagaaaatcaaaggctaggggttggttctctt 14689655  T
Q  172 ttggggatagattctagagttgggaaaca 200  Q
    |||||||||||||||||||||| ||||||    
T  14689654 ttggggatagattctagagttgtgaaaca 14689626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 40147067 - 40147215
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || ||||||||||||||||||||| |||||||||     
T  40147067 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 40147166  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  40147167 gctaagggttggttctcttttgggggttagattctagagttgggaaaca 40147215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 200
Target Start/End: Original strand, 27015343 - 27015486
Alignment:
Q  60 catggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaa 157  Q
    ||||||||||| ||||| || |   |||||||||| ||||| || |||| |||||||||  | ||||||||||||||||||||| ||||||||| | |||    
T  27015343 catggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtaaaaccaaaagagaagatccttagtgaaatcaaaggctaa 27015442  T
Q  158 gagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||||||||||||| |||| ||||||||||||||||||||||    
T  27015443 gggttggttctcttttgggggttagattctagagttgggaaaca 27015486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 316560 - 316692
Alignment:
Q  43 ccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag 142  Q
    |||||||  ||||||| |||  |||||| ||||| || ||| ||||||||||||||| || ||||| || ||||||||||||||||||||| ||||| ||    
T  316560 ccttttggggagagattcataaggttgggaaacacatcaaaagagagtctttgtgagcaacttggt-gaatcttgggagaccaaaagagaaaatcct-ag 316657  T
Q  143 gaaatcaaatggtaagagttggttctcttttgggg 177  Q
    ||||||||| | |||| ||||||||||||||||||    
T  316658 gaaatcaaaggctaagggttggttctcttttgggg 316692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 5057853 - 5058001
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||||||||| || |   ||||||| |||||||| || ||||  |||||||| || |||||||||||||||||||||  ||||||||     
T  5057853 agattcatggggttggaaaacacatgagtggagagtcatttgtgagcaacttgggcgagtcttgtgaaaccaaaagagaagatccttagtaaaatcaaag 5057952  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| |||||||||||||||| |||||    
T  5057953 gctaagggttggttctcttttgggggttagattctagagttggaaaaca 5058001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 33906402 - 33906294
Alignment:
Q  43 ccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag 142  Q
    |||||||  ||||||| ||||||||||  ||||| || ||| ||||| ||| ||||| || |||| |||||||||||| |||||||||||||||||||||    
T  33906402 ccttttggggagagattcatggggttgagaaacacatcaaaggagagacttagtgagcaacttgggtgagtcttgggaaaccaaaagagaagatccttag 33906303  T
Q  143 gaaatcaaa 151  Q
    |||||||||    
T  33906302 gaaatcaaa 33906294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 38746861 - 38746959
Alignment:
Q  104 ttggttgagtcttgggagaccaaaagagaagatcctta-ggaaatcaaatggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    |||| ||||||||| || ||||||||||||||||||||  ||||||||| | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  38746861 ttgggtgagtcttgtgaaaccaaaagagaagatccttattgaaatcaaaggctaagggttggttctcttttgggggttagattctagagttgggaaaca 38746959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 35615927 - 35616127
Alignment:
Q  4 ggagaagcaaaggaggagactcttgggaaatgatttgtaccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaat 103  Q
    |||||| |||| |||| ||||||||||||| |  |  | |||||||  ||||||| ||||| ||||  ||||| ||||||  ||||||||||| |  ||     
T  35615927 ggagaaccaaaagaggggactcttgggaaaggggtgatgccttttggggagagattcatggagttgagaaacacataaaagaagagtctttgtaatcaac 35616026  T
Q  104 ttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaacactt 203  Q
    || | |||||||||||| |||||||| ||||||| | | ||||||||| | || |||||| |||||||||| || |||||||||||||| ||||||| ||    
T  35616027 tttggtgagtcttgggaaaccaaaagcgaagatcatcaagaaatcaaaggcta-gagttgattctcttttgtggttagattctagagtttggaaacaatt 35616125  T
Q  204 ag 205  Q
    ||    
T  35616126 ag 35616127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 213275 - 213419
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || ||||||||||||||||||||| |||||||||     
T  213275 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 213374  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | ||||    ||||||||||| |||| ||||||||||||||||||||||    
T  213375 gctaag----ggttctcttttgggggttagattctagagttgggaaaca 213419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 28278161 - 28278270
Alignment:
Q  93 ttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctagag 190  Q
    ||||||| || |||| ||||||||| || | |||||||||||||  |||| ||||||||||| |||| ||||| |||||||| |||| ||||||||||||    
T  28278161 ttgtgagcaacttgggtgagtcttgtgaaatcaaaagagaagattgttagtgaaatcaaatgctaagggttggctctcttttaggggttagattctagag 28278260  T
Q  191 ttgggaaaca 200  Q
    ||||||||||    
T  28278261 ttgggaaaca 28278270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 35616237 - 35616290
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaagcatagtgat 334  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  35616237 gtaacccttttgtatttctttgtaaagaactcattgatagtgaaacataatgat 35616290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 16641247 - 16641155
Alignment:
Q  109 tgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttgggga-tagattctagagttgggaaaca 200  Q
    ||||||||| || ||||||||||||||| ||||  |||||||| | |||  ||||||||||||||||||| ||||||||||||||||| ||||    
T  16641247 tgagtcttgtgaaaccaaaagagaagatacttaaaaaatcaaaggctaaaggttggttctcttttggggattagattctagagttggggaaca 16641155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 4160477 - 4160562
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttgggg 177  Q
    |||||||| || | || ||| |||||||| |||||||||||||||||||||| ||| ||| | |||| ||||||||||||||||||    
T  4160477 tttgtgagcaactagggtgaatcttgggaaaccaaaagagaagatccttaggtaattaaaggctaagggttggttctcttttgggg 4160562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 13695791 - 13695750
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  13695791 gtaacccttttgtatctctttgtaaagaactcattaatagtg 13695750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 27637928 - 27637828
Alignment:
Q  104 ttggttgagtcttgggagaccaaaagaga--agatccttag-gaaatcaaatggtaagagttggttctcttttggggat-agattctagagttgggaaac 199  Q
    |||| ||||||||| || |||||||||||  |||||||||| |||||||||   ||| |||| |||||||||||||| | |||| |||||||||||||||    
T  27637928 ttgggtgagtcttgtgaaaccaaaagagagaagatccttagtgaaatcaaagactaaaagtttgttctcttttgggggttagatgctagagttgggaaac 27637829  T
Q  200 a 200  Q
    |    
T  27637828 a 27637828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 8445783 - 8445823
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagt 321  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  8445783 gtaacccttttgtatttctttataaagaactaattgatagt 8445823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 10054969 - 10054929
Alignment:
Q  240 aaatgggtagaaattatgtttgttcttggagagttagttga 280  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  10054969 aaatgggtagaaattatgtttgttcttgaagagtttgttga 10054929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 30793204 - 30793248
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    |||||| |||||||| ||||||||||||||| |||||||||||||    
T  30793204 gtaaccattttgtatctctttgtaaagaactaattgatagtgaag 30793248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 32609603 - 32609647
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||    
T  32609603 gtaactcttttgtatttctttgtaaagaacttattgatattgaag 32609647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 33906131 - 33906091
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagt 321  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  33906131 gtaatccttttgtatctctttgtaaagaactcattgatagt 33906091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 30802697 - 30802768
Alignment:
Q  5 gagaagcaaaggaggagactcttgggaaatgatttgtaccttttgtagagagatacatggggttggaaaaca 76  Q
    ||||| |||| |||||| ||||||||||| | ||||| |||||||  ||||||| ||||||||| |||||||    
T  30802697 gagaaccaaaagaggaggctcttgggaaagggtttgtgccttttggggagagattcatggggttagaaaaca 30802768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 32583377 - 32583338
Alignment:
Q  287 cttttgtatttctttgtaaagaactcattgatagtgaagc 326  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  32583377 cttttgtatctttttgtaaagaactcattgatagtgaagc 32583338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 316830 - 316868
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgata 319  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  316830 gtaatccttttgtatctctttgtaaagaactcattgata 316868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 8019464 - 8019537
Alignment:
Q  124 caaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagttgggaaa 198  Q
    |||||| |||||||||||| |||||||| | |||| ||||||| | ||| |||| ||||||||| ||||||||||    
T  8019464 caaaagtgaagatccttagaaaatcaaaggctaag-gttggttatttttgggggttagattctatagttgggaaa 8019537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 5007806 - 5007843
Alignment:
Q  288 ttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  5007806 ttttctatctctttgtaaagaactcattgatagtgaag 5007843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 25412828 - 25412868
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  25412828 gtaacccttttgtatctctttgt-aagaactcattgatagtg 25412868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 10054912 - 10054876
Alignment:
Q  286 ccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  10054912 ccttttgtatctctttgtaatgaactcattgatagtg 10054876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 1632094 - 1631946
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || ||||||||||||||||||||| |||||||||     
T  1632094 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 1631995  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  1631994 gctaagggttggttctcttttgggggttagattctagagttgggaaaca 1631946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 42288472 - 42288324
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| ||||||||| || ||||||||||||||||||||| |||||||||     
T  42288472 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtgaaatcaaag 42288373  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| |||||||||||||| |||  ||||||||||||||||||||||    
T  42288372 gctaagggttggttctcttttcgggtttagattctagagttgggaaaca 42288324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 233
Target Start/End: Complemental strand, 42261974 - 42261792
Alignment:
Q  52 gagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaa 151  Q
    ||||||| |||||| |||| ||||| || ||| |||||| ||| |||| || ||||  |||||||  ||||||||||||| | ||| |||||||||||||    
T  42261974 gagagattcatgggattgggaaacacatcaaaggagagtttttatgagcaacttgggcgagtcttacgagaccaaaagagtatatcattaggaaatcaaa 42261875  T
Q  152 tggtaagagttggttctcttttggggatagattctagagttgggaaaca-cttagattgagtgaattcattgagtctcttgtt 233  Q
     | || |  |||||||  ||| |||| |||| ||||||||||||||||| ||| ||| ||||||| |||||||||||||||||    
T  42261874 agctacggattggttccttttaggggttagaatctagagttgggaaacaccttggatcgagtgaactcattgagtctcttgtt 42261792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 35447246 - 35447098
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| |||||||||  | ||||||||||||||| ||||| |||||||||     
T  35447246 agattcatggggttgggaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtaaaaccaaaagagaagatacttagtgaaatcaaag 35447147  T
Q  153 ggtaagagttggttctcttttggggat-agattctagagttgggaaaca 200  Q
    | |||| |||||||||||||||||| | |||||||||||||||||||||    
T  35447146 gctaagggttggttctcttttgggggttagattctagagttgggaaaca 35447098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 17450436 - 17450544
Alignment:
Q  93 ttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctct-tttggggatagattctagagt 191  Q
    |||||||||| |||| ||||||||| || |||||||||||||||| ||||||||||||| | |||| |||| |||||| || |||| | |||||||||||    
T  17450436 ttgtgagaaacttgggtgagtcttgtgaaaccaaaagagaagatcattaggaaatcaaaggctaagggttgattctctattgggggttggattctagagt 17450535  T
Q  192 tgggaaaca 200  Q
    ||| |||||    
T  17450536 tggcaaaca 17450544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 45726773 - 45726883
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctctttt-ggggatagattctaga 189  Q
    |||||||| || |||| |||||| || || ||||||||||||||||||||| ||||||||| | |||| |||||||||||||| |||| ||||||||||     
T  45726773 tttgtgagcaacttgggtgagtcatgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctagg 45726872  T
Q  190 gttgggaaaca 200  Q
    ||| |||||||    
T  45726873 gttaggaaaca 45726883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 238
Target Start/End: Complemental strand, 30218407 - 30218211
Alignment:
Q  43 ccttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag 142  Q
    |||||||  ||||||| ||||||||||| ||||| |  ||| |||| |||||||||| || |||  ||||||||| || |||||||| |  |||||||||    
T  30218407 ccttttggggagagattcatggggttgggaaacacaccaaaggagaatctttgtgagcaacttgagtgagtcttgcgaaaccaaaag-ggggatccttag 30218309  T
Q  143 gaaatcaaatggtaagagttggttctctttt-ggggatagattctagagttgggaaacacttagattgagt-gaattcattgagtctcttgtttatgg 238  Q
    ||||||||| | |||   ||||||||||||| |||| |||  |||||||||||||||||| | ||  |||| ||| ||||||||| ||||||| ||||    
T  30218308 gaaatcaaaagctaaatattggttctcttttgggggttaggctctagagttgggaaacaccttgacagagtggaaatcattgagtgtcttgttcatgg 30218211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 320
Target Start/End: Original strand, 33648239 - 33648278
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatag 320  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33648239 gtaacccttttgtatttctttgtaaagaactcattgatag 33648278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 43730992 - 43731093
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagt 191  Q
    |||||||| ||||||| ||| |||||||| ||||||| |||| |||| ||||||||||||   |||  ||||||| |||||||||| || ||||||||||    
T  43730992 tttgtgagcaatttgggtgaatcttgggaaaccaaaatagaatatccgtaggaaatcaaagtctaaaggttggtt-tcttttggggttaaattctagagt 43731090  T
Q  192 tgg 194  Q
    |||    
T  43731091 tgg 43731093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 24398125 - 24398163
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgata 319  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  24398125 gtaacccttttgtatctctttgtaaagaactcattgata 24398163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 42261734 - 42261660
Alignment:
Q  161 ttggttctctttt-ggggatagattctagagttgggaaacac-ttagattgagtgaattcattgagtctcttgtt 233  Q
    ||||||| ||||| |||| |||| |||||||||||||||||| || ||| ||||||| |||||||||||||||||    
T  42261734 ttggttcccttttaggggttagactctagagttgggaaacaccttggatcgagtgaactcattgagtctcttgtt 42261660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 24397902 - 24398007
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaatggtaagagttggttctcttttggggatagattctagagt 191  Q
    |||||||  ||||||| | ||||||| || |||||||||||| |||||||| || ||||| | |||| ||||||  ||||| |||| |||||| ||||||    
T  24397902 tttgtgaccaatttgggttagtcttgtgaaaccaaaagagaatatccttagaaagtcaaa-gctaagggttggt--tctttgggggttagattatagagt 24397998  T
Q  192 tgggaaaca 200  Q
    |||||||||    
T  24397999 tgggaaaca 24398007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 42261586 - 42261541
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaagc 326  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  42261586 gtaactcttttgtatatctttgtaaagtactcattgatagtgaagc 42261541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 41454308 - 41454346
Alignment:
Q  287 cttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  41454308 cttttgtatatatttgtaaagaactcattgatagtgaag 41454346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 1778 - 1606
Alignment:
Q  44 cttttgtagagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttagg 143  Q
    ||||||| ||||||| ||||  ||||  ||||| || | ||||||||| ||||||| || ||||  ||||||||||||| ||||||||||||||||||||    
T  1778 cttttgtggagagattcatgtagttgagaaacacatcatatgagagtcattgtgagcaacttgggcgagtcttgggagatcaaaagagaagatccttagg 1679  T
Q  144 aaatcaaa----------tggtaagagttggttctcttttggggatagattctagagttgggaaacacttaga 206  Q
    ||||||||          |  |||| |||||||||||||||||| |||||||||||||||||||||| |||||    
T  1678 aaatcaaaagcttataacttataagtgttggttctcttttggggttagattctagagttgggaaacaattaga 1606  T

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Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 233
Target Start/End: Complemental strand, 490809 - 490627
Alignment:
Q  52 gagagatacatggggttggaaaacaaataaaatgagagtctttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaatcaaa 151  Q
    ||||||| |||||| |||| ||||| || ||| |||||| ||| |||| || ||||  |||||||  ||||||||||||| | ||| |||||||||||||    
T  490809 gagagattcatgggattgggaaacacatcaaaggagagtttttatgagcaacttgggcgagtcttacgagaccaaaagagtatatcattaggaaatcaaa 490710  T
Q  152 tggtaagagttggttctcttttggggatagattctagagttgggaaaca-cttagattgagtgaattcattgagtctcttgtt 233  Q
     | || |  |||||||  ||| |||| |||| ||||||||||||||||| ||| ||| ||||||| |||||||||||||||||    
T  490709 agctacggattggttccttttaggggttagaatctagagttgggaaacaccttggatcgagtgaactcattgagtctcttgtt 490627  T

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Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 490569 - 490495
Alignment:
Q  161 ttggttctctttt-ggggatagattctagagttgggaaacac-ttagattgagtgaattcattgagtctcttgtt 233  Q
    ||||||| ||||| |||| |||| |||||||||||||||||| || ||| ||||||| |||||||||||||||||    
T  490569 ttggttcccttttaggggttagactctagagttgggaaacaccttggatcgagtgaactcattgagtctcttgtt 490495  T

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Target: scaffold0002; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 490421 - 490376
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaagc 326  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  490421 gtaactcttttgtatatctttgtaaagtactcattgatagtgaagc 490376  T

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Target: scaffold0002; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 434601 - 434641
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtg 322  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  434601 gtaacccttttgtatctctttgt-aagaactcattgatagtg 434641  T

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Target: scaffold0466 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 190
Target Start/End: Original strand, 7134 - 7272
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||||||||| || |   |||||||||| ||||| || |||| ||||||||| || |||||||||||||||||||||  ||||||||     
T  7134 agattcatggggttggaaaacacatgagtggagagtcttttgtgagcaacttgggtgagtcttgtgaaaccaaaagagaagatccttagtaaaatcaaag 7233  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagag 190  Q
    | |||| |||||||||||||| |||| ||||||||||||    
T  7234 gctaagggttggttctcttttgggggttagattctagag 7272  T

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Target: scaffold0014 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 80645 - 80497
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtcttt-gtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaat 152  Q
    |||| ||||||||||| ||||| || |   |||||||||| ||||| || |||| |||||||||||| || ||||||| |||||||||| |||||||||     
T  80645 agattcatggggttgggaaacacatgagcggagagtcttttgtgagcaacttgggtgagtcttgggaaactaaaagagtagatccttagtgaaatcaaag 80546  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||| ||||||||| |||| |||| |||||||||||||| |||||||    
T  80545 gctaagggttggttctattttgggggttagattctagagttaggaaaca 80497  T

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Target: scaffold0176 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 18325 - 18222
Alignment:
Q  92 tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttag-gaaatcaaatggtaagagttggttctcttttggggatagattctagag 190  Q
    |||||||| || |||  |||||||||  | ||||||||||||||||||||| |||||||||   ||||||||||||||||||||||| |||||| |||||    
T  18325 tttgtgagcaacttgagtgagtcttgtaaaaccaaaagagaagatccttagtgaaatcaaagactaagagttggttctcttttggggttagattatagag 18226  T
Q  191 ttgg 194  Q
    ||||    
T  18225 ttgg 18222  T

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Target: scaffold0286 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 11364 - 11512
Alignment:
Q  55 agatacatggggttggaaaacaaataaaatgagagtc-tttgtgagaaatttggttgagtcttgggagaccaaaagagaagatccttaggaaa-tcaaat 152  Q
    |||| ||||||||||| ||||| || |   ||||||| ||| |||| || |||| ||||||||| || |||||||||||||||| |||| ||| |||||     
T  11364 agattcatggggttgggaaacacatgagtggagagtcatttctgagcaacttgggtgagtcttgtgaaaccaaaagagaagatcattagtaaaatcaaag 11463  T
Q  153 ggtaagagttggttctctttt-ggggatagattctagagttgggaaaca 200  Q
    | |||  |||| ||||||||| |||| ||||||||||||||||||||||    
T  11464 gctaaaggttgtttctctttttggggttagattctagagttgggaaaca 11512  T

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Target: scaffold0053 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 25121 - 25165
Alignment:
Q  281 gtaacccttttgtatttctttgtaaagaactcattgatagtgaag 325  Q
    |||||| |||||||| |||||||||||||||||||||||||||||    
T  25121 gtaacctttttgtatctctttgtaaagaactcattgatagtgaag 25165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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