View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_21 (Length: 346)
Name: NF20008_low_21
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 64 - 331
Target Start/End: Complemental strand, 46582629 - 46582362
Alignment:
| Q |
64 |
cttcaagtaacacaaagaaactaaatcaagtgttaggtggagagttctgagaagattgttcttcttgtctagtttcttgctgagtattgataggtgttgc |
163 |
Q |
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| T |
46582629 |
cttcaagtagcacaaagaaactaaatcaagtgttaggtggagagttctgagaagattgttcttcttgtctagtttcttgctgagtattgataggtgttgc |
46582530 |
T |
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| Q |
164 |
aggaagtgaagtggtgctagtttcatttaccctcataggtattgaatggttaattctgccatcaatacaagtagaacattttttctctgcccagctttct |
263 |
Q |
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| T |
46582529 |
aggaagtgaagtggtgctagtttcatttactctcataggtattgaatggttaattctgccatcaatacaagtagaacattttttctctgcccagctttct |
46582430 |
T |
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| Q |
264 |
atatcatattggccatgacccatgattcttcttcctgagcatagccttccaatcattactgcaattat |
331 |
Q |
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| T |
46582429 |
atatcatattggccatgacccatgattcttcttcctgagcatagccttccaatcattactgcaattat |
46582362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 46582736 - 46582700
Alignment:
| Q |
10 |
agatgaattcattgaatgtaactatatgaatcagtgc |
46 |
Q |
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| T |
46582736 |
agatgaattcattgaatgtaactatatgaatcagtgc |
46582700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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