View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_22 (Length: 344)
Name: NF20008_low_22
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 328
Target Start/End: Original strand, 42453221 - 42453532
Alignment:
| Q |
15 |
tattaattacaaaagatacttacataggttttacatatatgtgaaaaggaaattgctacttttagcgaaagaaattcagcgaaaacttcacgatagctac |
114 |
Q |
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| T |
42453221 |
tattaattacaaaagatacttacataggttttacatatatgtgaaaaggaaattgctacttttagcgaaagaaattcagcgaaaacttcacgatagctac |
42453320 |
T |
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| Q |
115 |
tccatgtatcatccnnnnnnnctgccccattacctcccatttatcccggacataaacaaattcaattggctgatttaatttcgggaactattcacgatca |
214 |
Q |
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| T |
42453321 |
tccatgtatcatccaaaaaaactgccccattacctcccatttatcccggacataaacaaattcaattggctgatttaatttcgggaactattcacgatc- |
42453419 |
T |
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| Q |
215 |
attctatcgggacaaatagcatcactcatgtgaaaaatgactccactgattattcatgaataatatagaagtattcaaccctttggacaacgatgaaaca |
314 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453420 |
-ttctattgggacaaatagcatcactcatgtgaaaaatcactccactgattattcatgaataatatagaagtattcaaccctttggacaacgatgaaaca |
42453518 |
T |
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| Q |
315 |
taatatggagctca |
328 |
Q |
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| T |
42453519 |
taatatggagctca |
42453532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 27129575 - 27129509
Alignment:
| Q |
59 |
aaaggaaattgctacttttagcgaaagaaattcagcgaaaacttcacgatagctactccatgtatca |
125 |
Q |
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| T |
27129575 |
aaaggaaattgctacttttagcgaaagaaatcgagcgaaaacttcacaatatctactccatgtatca |
27129509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 27982342 - 27982294
Alignment:
| Q |
80 |
cgaaagaaattcagcgaaaacttcacgatagctactccatgtatcatcc |
128 |
Q |
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| T |
27982342 |
cgaaagaaatccaacgaaaatttcaccatagctactccatttatcatcc |
27982294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 10410104 - 10410157
Alignment:
| Q |
58 |
aaaaggaaattgctacttttagcgaaagaaattcagcgaaaacttcacgatagc |
111 |
Q |
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| T |
10410104 |
aaaaggaaattgctacttttagcaaaataaattcaacgaaaacttcacgatagc |
10410157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 55016410 - 55016346
Alignment:
| Q |
62 |
ggaaattgctacttttagcgaaagaaattcagcgaaaacttcacgatagctactccatgtatcat |
126 |
Q |
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|||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
55016410 |
ggaaattggtacttttaatgaaagagttacagcgaaaacttcacgatagctactccatgtatcat |
55016346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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