View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_23 (Length: 340)
Name: NF20008_low_23
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 22 - 325
Target Start/End: Original strand, 6445436 - 6445736
Alignment:
| Q |
22 |
atgatatgcattcaatcatggatgtcagcagcagtaggtgagttagtcagaccatgatgatttagttccgttgaatttctaaggatctgtgaaccagaaa |
121 |
Q |
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| T |
6445436 |
atgatatgcattcaatcatggatgtcagcagcagtaggtgagttagtcagaccatgatgatttagttccgttgaatttctaaggatctgtgacctagaag |
6445535 |
T |
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| Q |
122 |
ggtattatttgcaatagataatggcaaatgcaaacatgttcttgggaatcttggcaagtcacaatgttaatcgaactcaatnnnnnnnntaaaataaatc |
221 |
Q |
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| T |
6445536 |
ggtattatttgcaatagataatggcaaatgcaaacatgttcttgggtatcttggcaagtcacaatgttaatcgaactcaat---aaaaataaaataaatc |
6445632 |
T |
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| Q |
222 |
aacaatgatatatgtacctccaataattatctatatctattcaacatttcannnnnnnnatcacattattaatttattacatccatcgcatcactctttt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
6445633 |
aacaatgatatatgtacctccaataattatctatatctattcaacatttcattttctttatcacattattaatttattacatctatcgcatcactctttt |
6445732 |
T |
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| Q |
322 |
ctat |
325 |
Q |
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|||| |
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| T |
6445733 |
ctat |
6445736 |
T |
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