View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_24 (Length: 337)
Name: NF20008_low_24
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 41328897 - 41329216
Alignment:
| Q |
1 |
caaatattttaggattgtgatgatgatgacgacaattattagaaagaaagcgattgttggtgtgggaatctaattagtgataggttgcatgtgcaattat |
100 |
Q |
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| T |
41328897 |
caaatattttaggattgtgatgatgatgacgacaattattagaaagaaagcgattgttggtgtgggaatctaattagtgataggttgcatgtgcaattat |
41328996 |
T |
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| Q |
101 |
acatgtctatatgtttgtaatatgacacattgattgtggggtttgtatgtgtggctaataattgaacaattcaaatcaataagcaaatgcctcccgtaac |
200 |
Q |
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| T |
41328997 |
acatgtctatatgtttgtaatatgacacattgattgtggggtttgtatgtgtggctaataattgaacaattcaaatcaataagcaaatgcctcccgtaac |
41329096 |
T |
|
| Q |
201 |
tatatgaaattgcattccataatttaattaaattattgcaacccattaggcccaaaattagccacattacatccatggaattggtacgttgtttccgttc |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41329097 |
tatatgaaattgcattgcataatttaattaaattattgcaacccattaggcccaaaattagccacattacatccatggaattggtacgttgtttccgttc |
41329196 |
T |
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| Q |
301 |
tttaatttgcagcatttgtg |
320 |
Q |
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|||||||||||||||||||| |
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| T |
41329197 |
tttaatttgcagcatttgtg |
41329216 |
T |
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