View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_25 (Length: 325)
Name: NF20008_low_25
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 26050185 - 26050479
Alignment:
| Q |
1 |
gacaaaaacaagaatgttacagactctactcttgctgttgctaccaatccgccggcagttgtcacctatgcaaaacagttcccagacgtttccagaattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26050185 |
gacaaaaacaagaatgttacagactctactcttgctgttgctaccaatccgccggcagttgtcacctatgcaaaacagttcccagacgtttccagaattg |
26050284 |
T |
|
| Q |
101 |
aagtgtttaaaggacagaatttccgtcgttggaatgaacgtgtcttcactctgttagatgtccacggtggtgctgcttccgttcttactgatgtcaaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
26050285 |
aagtgtttaaaggacagaatttccgtcgttggaatgaacgtgtcttcactctgttagatgtccac---ggtgttgcttccgttcttactgatgtcaaacc |
26050381 |
T |
|
| Q |
201 |
agatgaagccaaatcagatgccaaacaaattgaaaaatggaacaatgctaacaaggtttgtcgccatacaattctttctacaatatatgatgcacttt |
298 |
Q |
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| T |
26050382 |
agatgaagccaaatcagatgccaaacaaattgaaaaatggaacaatgctaacaaggtttgtcgccatacaattctttctacaatatctgatgcacttt |
26050479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 27075152 - 27075446
Alignment:
| Q |
1 |
gacaaaaacaagaatgttacagactctactcttgctgttgctaccaatccgccggcagttgtcacctatgcaaaacagttcccagacgtttccagaattg |
100 |
Q |
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|
|||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075152 |
gacaaaaacaagaatgttacagactctactttttctgttgctaccaatccgccagcagttgtcacctatgcaaaacagttcccagacgtttccagaattg |
27075251 |
T |
|
| Q |
101 |
aagtgtttaaaggacagaatttccgtcgttggaatgaacgtgtcttcactctgttagatgtccacggtggtgctgcttccgttcttactgatgtcaaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
27075252 |
aagtgtttaaaggacagaatttccgtcgttggaatgaacgtgtcttcactctgttagatgtccac---ggtgttgcttccgttcttactgatgtcaaacc |
27075348 |
T |
|
| Q |
201 |
agatgaagccaaatcagatgccaaacaaattgaaaaatggaacaatgctaacaaggtttgtcgccatacaattctttctacaatatatgatgcacttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27075349 |
agatgaagccaaatcagatgccaaacaaattgaaaaatggaacaatgctaacaaggtttgtcgccatacaattctttctacaatatctgatgcacttt |
27075446 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 36610208 - 36610483
Alignment:
| Q |
1 |
gacaaaaacaagaatgttacagactctactcttgctgttgctaccaatccgcc---ggcagttgtcacctatgcaaaacagttcccagacgtttccagaa |
97 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||| ||||||||| |||| || |||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
36610208 |
gacaataacaagaatgtctcagactctacccttgttgttgctactgatcctcctccggcagtggtcacctatgcaatacagttcccagacgtttccagaa |
36610307 |
T |
|
| Q |
98 |
ttgaagtgtttaaaggacagaatttccgtcgttggaatgaacgtgtcttcactctgttagatgtccacggtggtgctgcttccgttcttactgatgtcaa |
197 |
Q |
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||||||| ||| | ||||||||||||||||||| || ||||||| ||| |||| |||||||||| ||| |||| ||||||||||||||| |
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| T |
36610308 |
ttgaagtttttgatggacagaatttccgtcgtt-------acccatcttcacactgctagacgtccacggtgtcgct---tccgctcttactgatgtcaa |
36610397 |
T |
|
| Q |
198 |
accagatgaagccaaatcagatgccaaacaaattgaaaaatggaacaatgctaacaaggtttgtcgccatacaattctttctacaa |
283 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
36610398 |
accagatgaagccaaatcagatcccaaacaaattgaaaaatggacaaatgctaacaaggtttgtcgccatacaattcttcctacaa |
36610483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 36611866 - 36611580
Alignment:
| Q |
1 |
gacaaaaacaagaatgttacagactctactcttgctgttgctaccaatccgcc---ggcagttgtcacctatgcaaaacagttcccagacgtttccagaa |
97 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||| ||||| ||| |||| || | |||| |||||||||| |||| |||||||||||||||| |||| |
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| T |
36611866 |
gacaataacaagaatgtctcagactctacccttgttgttgatactgatcctcctccgacagtggtcacctatgtaaaatagttcccagacgtttctagaa |
36611767 |
T |
|
| Q |
98 |
ttgaagtgtttaaaggacagaatttccgtcgttggaatgaacgtgtcttcactctgttagatgtccacggtggtgctgcttccgttcttactgatgtc-- |
195 |
Q |
| |
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||||||| ||| | ||||| | |||| |||||||| ||||| | ||||||| ||| ||| ||||| ||| ||| || || |||||||||||| |
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| T |
36611766 |
ttgaagtttttgatggacatactttcagtcgttggcatgaatgcatcttcacactgctaggcgtccatagtgtcgcttctgcc---cttactgatgtcgt |
36611670 |
T |
|
| Q |
196 |
-aaaccagatgaagccaaatcagatgccaaacaaattga--aaaatggaacaatgctaacaaggtttgtcgccatacaattctttctaca |
282 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |||||| |||||||||||||||||||||| |
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| T |
36611669 |
caaactagatgaagccaaatcagatcccaaacaaattgaaaaaaatggacaaatgctaaccaggtttttcgccatacaattctttctaca |
36611580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 279
Target Start/End: Complemental strand, 14636346 - 14636100
Alignment:
| Q |
27 |
tactcttgctgttgctaccaatccgccggcagttgtcacctatgcaaaacagttcccagacgtttccagaattgaagtgtttaaaggacagaatttccgt |
126 |
Q |
| |
|
|||||||| ||||||| | |||| ||| |||| ||| |||||||||||||||||| ||||||||| |||||||||| ||| | ||||| ||||| ||| |
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| T |
14636346 |
tactcttgtagttgctagctatcctccgacagtggtcgcctatgcaaaacagttcctagacgtttcatgaattgaagtttttgatggacataattttcgt |
14636247 |
T |
|
| Q |
127 |
cgttggaatgaacgtgtcttcactctgttagatgtccacggtggtgctgcttccgttcttactgatgtcaaaccagatgaagccaaatcagatgccaaac |
226 |
Q |
| |
|
||||| ||||||| ||||||| ||| |||| |||||| |||| ||||||| || |||||| |||| |||||||| ||||| |||| |||||| |
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| T |
14636246 |
cgttgacatgaacgcatcttcacactgctagacgtccac---ggtgtcgcttccg---ctaatgatgttaaactagatgaagtcaaataagatcccaaac |
14636153 |
T |
|
| Q |
227 |
aaattgaaaaatggaacaatgctaacaaggtttgtcgccatacaattctttct |
279 |
Q |
| |
|
|||| |||||||||| |||| |||||||||| || |||||||||||||||| |
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|
| T |
14636152 |
aaatcgaaaaatggacaaatgttaacaaggttcgtaaccatacaattctttct |
14636100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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