View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_26 (Length: 318)
Name: NF20008_low_26
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 1666689 - 1666986
Alignment:
| Q |
8 |
attatacttacctgaagaaatacttgcaggttctaaatggcagtgcatacaatagaaaatgcgacgtgtatagtttcggcatatgtttatgggagatata |
107 |
Q |
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| T |
1666689 |
attatacttacctgaagaaatacttgcaggttctaaatggcagtgcatacaatagaaaatgcgacgtgtatagtttcggcatatgtttatgggagatata |
1666788 |
T |
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| Q |
108 |
ctgctgtgacatgccatatcctgaccttagtttttcagaagtaacatcagccgttgtaagacaggtaagtgaaatatattaagcgaatttaccatcgtaa |
207 |
Q |
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| T |
1666789 |
ctgctgtgacatgccatatcctgaccttagtttttcagaagtaacatcagccgttgtaagacaggtaagtgaaatatattaagcggatttaccatcgtaa |
1666888 |
T |
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| Q |
208 |
attaacatatcttgggaannnnnnnnggaaaacaacaaagaaaactattagggtgtgtttgtttcaaggtataaaatcacattctcggtaataacatt |
305 |
Q |
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| T |
1666889 |
attaacatatcttgggaattttttttggaaaacaacacagaaaactattagggtgtgtttgtttcaaggtataaaatcacattctcggtaataacatt |
1666986 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 35191676 - 35191764
Alignment:
| Q |
76 |
tatagtttcggcatatgtttatgggagatatactgctgtgacatgccatatcctgaccttagtttttcagaagtaacatcagccgttgt |
164 |
Q |
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| T |
35191676 |
tatagttttggcatatgtttatgggaaatatattgttgtgacatgccatatcctgacctaagtttctctgagattacttcagccgttgt |
35191764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 43975071 - 43975153
Alignment:
| Q |
64 |
aaatgcgacgtgtatagtttcggcatatgtttatgggagatatactgctgtgacatgccatatcctgaccttagtttttcaga |
146 |
Q |
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| T |
43975071 |
aaatgtgatgtgtacagttttggtatctgtttatgggagacatattgttgtgacatgccatatcctgacctaagtttctcaga |
43975153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 42725069 - 42725033
Alignment:
| Q |
255 |
ttagggtgtgtttgtttcaaggtataaaatcacattc |
291 |
Q |
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| T |
42725069 |
ttagggtgtgtttgtttcaagatatcaaatcacattc |
42725033 |
T |
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