View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_33 (Length: 255)
Name: NF20008_low_33
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_33 |
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| [»] scaffold0774 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0774 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0774
Description:
Target: scaffold0774; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 145 - 332
Alignment:
| Q |
58 |
acctaagattgacagactgactaatcaaaattccggtaaaaagagacatgatatgcacgtagaatttattcagaattagacaatcacagtcgctaaagga |
157 |
Q |
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| T |
145 |
accttagattgacaaactgacttatcataattccagtaacaagagacatgatatgcacgtagaatttattcagaattagacggtcacagtcgcgaaagga |
244 |
T |
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| Q |
158 |
aatattttaaaatgcgagaaactatacatccattaaccaaatgaatcccttcnnnnnnnccattccaagatttaatacacatcctttg |
245 |
Q |
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| T |
245 |
aattttttaaaatgtgagaaactatacatccattaaccaaatgaatcccttcaaaaaaaccattccaagatttaatacacatcctttg |
332 |
T |
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Target: scaffold0050 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 349 - 303
Alignment:
| Q |
15 |
aatcttaaccgttaatccataaagagttcacaaaaaataacttacct |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
349 |
aatcttaaccgttaatccataaagagttcacaaaaaataacttacct |
303 |
T |
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