View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20008_low_35 (Length: 246)

Name: NF20008_low_35
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20008_low_35
NF20008_low_35
[»] chr4 (8 HSPs)
chr4 (15-206)||(36370095-36370286)
chr4 (15-198)||(36389058-36389241)
chr4 (15-159)||(36375335-36375479)
chr4 (15-159)||(36428441-36428585)
chr4 (15-201)||(36418461-36418647)
chr4 (19-160)||(36406380-36406521)
chr4 (15-160)||(36434939-36435084)
chr4 (19-160)||(36398609-36398750)
[»] chr1 (2 HSPs)
chr1 (19-75)||(47583965-47584021)
chr1 (104-144)||(47640295-47640335)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 36370095 - 36370286
Alignment:
Q  15 aagaagagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370095 aagaagagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgct 36370194  T
Q  115 agtttatgaatacttaccaaacaaaagcctagacttctttatattcagtaagcatctttctagctcagtcattgtatctctagcctgtatga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36370195 agtttatgaatacttaccaaacaaaagcctagacttctttatattcagtaagcatctttctagctcagtcattgtatctctagcctgaatga 36370286  T

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Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 36389058 - 36389241
Alignment:
Q  15 aagaagagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgct 114  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||  ||||||| |||||||||||||||||||||||    
T  36389058 aagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaatctagtaaggttgctcagttgttgctttgaaaaagaagaaaggatgct 36389157  T
Q  115 agtttatgaatacttaccaaacaaaagcctagacttctttatattcagtaagcatctttctagctcagtcattgtatctctagc 198  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| || | |||| | ||||| ||||||||    
T  36389158 agtttatgaatacttaccaaacaaaagcctagacctttttatattcagtaagcatctctcaaactcacttattgtctctctagc 36389241  T

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Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 36375335 - 36375479
Alignment:
Q  15 aagaagagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgct 114  Q
    ||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||    
T  36375335 aagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaatctagtgaggttgctaggttgttgctttgaaaaggaagaaaggatgct 36375434  T
Q  115 agtttatgaatacttaccaaacaaaagcctagacttctttatatt 159  Q
     |||||||||||||||||||||||||||||||| |||||||||||    
T  36375435 ggtttatgaatacttaccaaacaaaagcctagatttctttatatt 36375479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 36428441 - 36428585
Alignment:
Q  15 aagaagagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgct 114  Q
    ||||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  36428441 aagaagagtttaagaatgaaattaaacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaaggatgct 36428540  T
Q  115 agtttatgaatacttaccaaacaaaagcctagacttctttatatt 159  Q
    ||||||||||||  |||||||||||||||||||||||||||||||    
T  36428541 agtttatgaatatctaccaaacaaaagcctagacttctttatatt 36428585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 36418461 - 36418647
Alignment:
Q  15 aagaagagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgct 114  Q
    ||||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  36418461 aagaagagtttaagaatgaaattaaacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaaggatgct 36418560  T
Q  115 agtttatgaatacttaccaaacaaaagcctagacttctttatattcagtaagcatctttctagctcagtcattgtatctctagcctg 201  Q
    |||||| |||||| || ||||||||||||||||||||||||||||| ||| || ||| |||   ||| ||||||| |||||| ||||    
T  36418561 agtttacgaatacctatcaaacaaaagcctagacttctttatattcggtatgcctctctctgaatcaatcattgtctctctaacctg 36418647  T

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Target: chr4; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 36406380 - 36406521
Alignment:
Q  19 agagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtt 118  Q
    |||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  36406380 agagtttaaaaatgaaattacacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaaggatgttagtt 36406479  T
Q  119 tatgaatacttaccaaacaaaagcctagacttctttatattc 160  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  36406480 tatgaatacctaccaaacaaaagcctagacttctttatattc 36406521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 36434939 - 36435084
Alignment:
Q  15 aagaagagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgct 114  Q
    ||||||||||||||| ||||||||  |||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |    
T  36434939 aagaagagtttaaaactgaagttacgcttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaaggatgtt 36435038  T
Q  115 agtttatgaatacttaccaaacaaaagcctagacttctttatattc 160  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||    
T  36435039 agtttatgaatacctaccaaacaaaagcctggacttctttatattc 36435084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 36398609 - 36398750
Alignment:
Q  19 agagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtt 118  Q
    |||||||||||||||| ||| ||||||||| || || || |||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||    
T  36398609 agagtttaaaaatgaaattacacttttagttaagctccagcacagaaatctagtaaggttgcttggttgttgcttcgaaaaagaagaaagaatgctagtt 36398708  T
Q  119 tatgaatacttaccaaacaaaagcctagacttctttatattc 160  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  36398709 tatgaatacctaccaaacaaaagcctagacttctttatattc 36398750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 47583965 - 47584021
Alignment:
Q  19 agagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgag 75  Q
    ||||||||||||||| ||| || || ||| ||| |||||||||||||||||||||||    
T  47583965 agagtttaaaaatgaggttcaagttatagccaagcttcaacacagaaatctagtgag 47584021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 47640295 - 47640335
Alignment:
Q  104 gaaaggatgctagtttatgaatacttaccaaacaaaagcct 144  Q
    |||| |||||| |||||||||||| ||||||||||||||||    
T  47640295 gaaaagatgcttgtttatgaatacataccaaacaaaagcct 47640335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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