View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_37 (Length: 237)
Name: NF20008_low_37
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 46505662 - 46505457
Alignment:
| Q |
17 |
atgaatgtcacaagattgtaccacacagaattattcttagtgtaaagggctcttagaattcttttttggtacatttcaatatattttttgggtacataat |
116 |
Q |
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| T |
46505662 |
atgaatgtcacaagattgtaccacacagaattatttttagtgtaaagggctcttagaattcttttttggtacatttcaatatattttttgggtacataat |
46505563 |
T |
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| Q |
117 |
ggcttttagaattcatcatcaaagattgtgctattaaagctgaagaatattaatgcatattgatccatactcttttatttttatctcatttcataaattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46505562 |
ggcttttagaattcatcatcaaagattgtgctattaaagctgaagaatattaatgcatattgatccatactcttttatttttatctcatttcataaattg |
46505463 |
T |
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| Q |
217 |
cttctt |
222 |
Q |
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|||||| |
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| T |
46505462 |
cttctt |
46505457 |
T |
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