View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_38 (Length: 237)
Name: NF20008_low_38
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 27000869 - 27000748
Alignment:
| Q |
21 |
atgtggtgtcccaatctcatgttaatcctagatcattggcctgttatttctcgtcactcaacaggcatgacaatttatttatttatttatccaggttgca |
120 |
Q |
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| T |
27000869 |
atgtggtgtcccaatctcatgttaatcctagatcattggcctgttatttgtcgtcactcaacagtcatgacaatttatttat----ttatccaggttgca |
27000774 |
T |
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| Q |
121 |
tgttgcttcttgttacttgtctatat |
146 |
Q |
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||||||||||||||| |||||||||| |
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| T |
27000773 |
tgttgcttcttgttaattgtctatat |
27000748 |
T |
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Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 27000924 - 27000829
Alignment:
| Q |
142 |
tatataagaaagatgacccatataactaattaatgccttaaaattttgggtggagatgtgatgtcccaatcttatgttaatcctagatcattggcc |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
27000924 |
tatataagaaagatgacccatataactaattaatgccttaaaattttgggtggagatgtggtgtcccaatctcatgttaatcctagatcattggcc |
27000829 |
T |
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