View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_39 (Length: 234)
Name: NF20008_low_39
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 25377841 - 25378042
Alignment:
| Q |
18 |
ataagcttcattgttccgccttaagtcacaagcgagtaattcttctattacttgaagattgaatgaagttagggcctagtcggtcttctcctttctgctt |
117 |
Q |
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| T |
25377841 |
ataagcttcattgttccgccttaagtcacaagcgagtaattcttctattacttgaagattgaatgaagttagggcctagtcggtcttctcctttctgctt |
25377940 |
T |
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| Q |
118 |
taattaccaaaaaccgaccttaaataaaccacctctctatctctctgttttaaattcaaccactccggctatctcttctatgtgatttttcaccgcttct |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25377941 |
taattacc-aaaaccgaccttaaataaaccacctctctatctctctgttttaaattcaaccactccggctatctcttctatgtgatttttcaccgcttct |
25378039 |
T |
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| Q |
218 |
ctg |
220 |
Q |
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||| |
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| T |
25378040 |
ctg |
25378042 |
T |
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