View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20008_low_4 (Length: 507)

Name: NF20008_low_4
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20008_low_4
NF20008_low_4
[»] chr6 (15 HSPs)
chr6 (13-490)||(20722822-20723299)
chr6 (13-291)||(12263414-12263695)
chr6 (25-140)||(26880219-26880335)
chr6 (13-159)||(7551009-7551156)
chr6 (20-165)||(1147910-1148056)
chr6 (77-166)||(11846729-11846819)
chr6 (13-154)||(1209080-1209222)
chr6 (77-166)||(11971900-11971991)
chr6 (75-164)||(9827227-9827318)
chr6 (33-135)||(2108478-2108573)
chr6 (75-165)||(7176099-7176190)
chr6 (75-164)||(26186312-26186402)
chr6 (75-136)||(5416511-5416574)
chr6 (75-136)||(2453764-2453824)
chr6 (228-288)||(11972053-11972113)
[»] chr2 (17 HSPs)
chr2 (15-216)||(28199985-28200187)
chr2 (35-154)||(30340823-30340943)
chr2 (75-287)||(22847694-22847906)
chr2 (82-154)||(33221119-33221191)
chr2 (75-165)||(33036648-33036739)
chr2 (75-166)||(3919474-3919566)
chr2 (75-154)||(44018565-44018645)
chr2 (75-121)||(29108875-29108921)
chr2 (209-291)||(4241262-4241346)
chr2 (232-291)||(31112299-31112359)
chr2 (116-159)||(29108643-29108686)
chr2 (59-140)||(38607540-38607621)
chr2 (228-289)||(4638918-4638979)
chr2 (232-289)||(36009812-36009869)
chr2 (75-150)||(37630815-37630887)
chr2 (100-219)||(31112156-31112276)
chr2 (100-207)||(36009667-36009777)
[»] chr1 (10 HSPs)
chr1 (47-254)||(4407174-4407381)
chr1 (25-149)||(4919850-4919975)
chr1 (100-219)||(12069808-12069928)
chr1 (80-166)||(32678061-32678148)
chr1 (250-291)||(8084930-8084971)
chr1 (108-216)||(18461673-18461782)
chr1 (100-216)||(8084764-8084882)
chr1 (76-113)||(11912059-11912096)
chr1 (240-291)||(12069725-12069777)
chr1 (75-154)||(17531086-17531166)
[»] chr7 (19 HSPs)
chr7 (13-166)||(27226517-27226669)
chr7 (25-166)||(46264845-46264987)
chr7 (78-291)||(39571268-39571496)
chr7 (75-136)||(25544843-25544904)
chr7 (13-116)||(30396733-30396836)
chr7 (75-154)||(31136626-31136708)
chr7 (116-291)||(46994174-46994360)
chr7 (396-457)||(8158119-8158180)
chr7 (84-135)||(19601817-19601869)
chr7 (75-150)||(45595816-45595891)
chr7 (249-291)||(7348310-7348352)
chr7 (76-136)||(49124700-49124761)
chr7 (249-289)||(27226393-27226433)
chr7 (75-254)||(2500624-2500814)
chr7 (100-206)||(11726938-11727045)
chr7 (88-159)||(48071109-48071180)
chr7 (75-121)||(12470674-12470720)
chr7 (221-291)||(45595962-45596032)
chr7 (222-254)||(48071244-48071276)
[»] scaffold1335 (1 HSPs)
scaffold1335 (20-290)||(302-583)
[»] chr3 (21 HSPs)
chr3 (20-290)||(35847680-35847961)
chr3 (75-252)||(33231023-33231207)
chr3 (35-166)||(27524392-27524520)
chr3 (40-154)||(22240868-22240982)
chr3 (75-145)||(779126-779196)
chr3 (36-150)||(11502850-11502968)
chr3 (75-166)||(28550998-28551090)
chr3 (77-159)||(30553723-30553806)
chr3 (75-165)||(44471505-44471598)
chr3 (75-146)||(44681620-44681693)
chr3 (75-136)||(46893064-46893126)
chr3 (61-165)||(38853739-38853845)
chr3 (75-130)||(44286018-44286073)
chr3 (76-150)||(26918103-26918176)
chr3 (248-290)||(46656205-46656247)
chr3 (58-154)||(11689819-11689916)
chr3 (224-291)||(46893224-46893292)
chr3 (249-291)||(2095974-2096016)
chr3 (249-291)||(27524607-27524649)
chr3 (100-146)||(54246993-54247039)
chr3 (228-291)||(16007561-16007625)
[»] chr4 (15 HSPs)
chr4 (25-150)||(8605745-8605873)
chr4 (38-206)||(8057282-8057458)
chr4 (36-154)||(38388445-38388564)
chr4 (78-150)||(42141725-42141798)
chr4 (79-166)||(19681676-19681762)
chr4 (75-166)||(9140621-9140713)
chr4 (75-154)||(13207007-13207086)
chr4 (73-150)||(13981465-13981543)
chr4 (232-291)||(4414178-4414237)
chr4 (76-146)||(53392769-53392841)
chr4 (228-291)||(19681551-19681615)
chr4 (116-207)||(28318838-28318928)
chr4 (116-166)||(3042126-3042175)
chr4 (249-291)||(38388650-38388692)
chr4 (87-150)||(1406886-1406950)
[»] chr8 (14 HSPs)
chr8 (20-166)||(25343625-25343772)
chr8 (58-166)||(25654375-25654485)
chr8 (38-153)||(25807812-25807928)
chr8 (75-165)||(9505517-9505607)
chr8 (226-291)||(44222678-44222744)
chr8 (79-136)||(3767296-3767353)
chr8 (75-217)||(42614679-42614820)
chr8 (75-166)||(3555023-3555116)
chr8 (75-148)||(32322288-32322362)
chr8 (223-289)||(35949614-35949680)
chr8 (81-159)||(40434558-40434638)
chr8 (75-136)||(20860015-20860077)
chr8 (224-257)||(42614629-42614662)
chr8 (58-98)||(25389570-25389610)
[»] scaffold0070 (2 HSPs)
scaffold0070 (58-159)||(34244-34347)
scaffold0070 (25-154)||(14261-14391)
[»] chr5 (12 HSPs)
chr5 (51-166)||(39786526-39786642)
chr5 (75-163)||(42307040-42307128)
chr5 (75-166)||(1497800-1497891)
chr5 (214-291)||(20665956-20666034)
chr5 (80-135)||(7238930-7238985)
chr5 (80-135)||(7244106-7244161)
chr5 (100-291)||(31896693-31896900)
chr5 (100-219)||(16745743-16745864)
chr5 (100-153)||(19948232-19948286)
chr5 (249-291)||(19948391-19948433)
chr5 (75-159)||(29126680-29126765)
chr5 (75-154)||(20665817-20665896)
[»] scaffold0564 (1 HSPs)
scaffold0564 (75-166)||(6778-6870)
[»] scaffold0002 (1 HSPs)
scaffold0002 (83-166)||(343984-344066)


Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Original strand, 20722822 - 20723299
Alignment:
Q  13 aatatagaacacgaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatat 112  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20722822 aatagagaacacgaaaaaacacaatatgaaatacaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaagtttgtgacaatat 20722921  T
Q  113 gaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttttttgaaaaagagta 212  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  20722922 gaattttttaattctattttcaaataaactgatcaaccgaattgatctaaaccacacaaaactgattagtttggctgggttgcttttttgaaaaagagta 20723021  T
Q  213 aaaaccgtactgataaagatttcattggttcgaacattttttgactgaaaactagtccaaaccgaaccgttacaccccttggaagccctatctagtctac 312  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20723022 aaaaccgaactgataaagatttcattggttcaaacattttttgactgaaaactagtccaaaccgaaccgttacaccccttggaagccctatctagtctac 20723121  T
Q  313 cttaccaagaataaagggtaattctacgtaggttcagccaccgtgttcctagttactacagtttctctgattcggatggctgcccactgttaccttagac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| ||    
T  20723122 cttaccaagaataaagggtaattctacgtaggttcagccaccgtgttccttgttactatagtttctctaattcggatggctgcccactgttaccttatac 20723221  T
Q  413 acttcctaattcgagtaattcaccgttagattaggtatctcacttcccaccatgttcctagttattacagtttcccta 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20723222 acttcctaattcgagtaattcaccgttagattaggtatctcacttcccaccatgttcctagttattacagtttcccta 20723299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 12263414 - 12263695
Alignment:
Q  13 aatatagaacacgaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatat 112  Q
    |||| |||||| ||||||| ||||||||||||| |||||||||| |||||||||||||| ||||| |||||| ||| ||||||||| || |||| |||||    
T  12263414 aatagagaacatgaaaaaacacaatatgaaatacaaagtttcatgaaatattttagtattatgtaagttgtaggcacgaaatacaaattagtgagaatat 12263513  T
Q  113 gaatt-ttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttttttgaaaaagagt 211  Q
       || ||||||||||| |||||||||||||||||||| |||  |||| |||||  || | || ||||  ||||| | ||||||| ||||||||||||||    
T  12263514 attttattttaattctactttcaaataaatcgatcaactgaagcgatcaaaaccaaactagaccgatttatttggttcggttcctcttttgaaaaagagt 12263613  T
Q  212 aaaaaccgtactgataaag-atttcattggttcgaaca-ttttttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
     ||||||| ||  |  ||| ||| ||| |||||| | | ||||||||||||||||  |||||||||||||||||||||||||    
T  12263614 gaaaaccgaacgaacgaagaattccatcggttcggatatttttttgactgaaaaccggtccaaaccgaaccgttacacccct 12263695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 26880219 - 26880335
Alignment:
Q  25 gaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaa-ttttttaa 123  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||  |||||||||||||| ||||||| |||||||| ||||||||    
T  26880219 gaaaaaacacaatatgaaatataaagtttcataaaatattttagtatgatatatgttgattgcatgaaatacaaatttgtgagaatatgaatttttttaa 26880318  T
Q  124 ttctattttcaaataaa 140  Q
    |||||||||||||||||    
T  26880319 ttctattttcaaataaa 26880335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 7551156 - 7551009
Alignment:
Q  13 aatatagaacacgaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatat 112  Q
    |||| ||||||  |||||| | ||||| ||||| |||||| ||| ||||||||||||||  | |||||||||||||| |||||||| ||||| | |||||    
T  7551156 aatagagaacattaaaaaacaaaatattaaatacaaagttccatgaaatattttagtattttctatgttgtatgcattaaatacaaatttgtaaaaatat 7551057  T
Q  113 gaattttttaattctattttcaaat-aaatcgatcaaccgaactgatc 159  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  7551056 gaattttttaattctgttttcaaataaaaccgatcaaccgaactgatc 7551009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 1147910 - 1148056
Alignment:
Q  20 aacacgaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaattt- 118  Q
    |||| ||||||| | |||||| | || |||| | ||| ||||||||||||||||  |||||| |||||||||||||||| ||||||| ||||||| |||     
T  1147910 aacatgaaaaaacaaaatatggattacaaagctccatgaaatattttagtatgacatatgttttatgcatgaaatacaaatttgtgagaatatgagttta 1148009  T
Q  119 tttaattctattttcaaataaatcgatcaaccgaactgatctaaacc 165  Q
    ||| ||| |||||||||||||| |||||||||||||||||| |||||    
T  1148010 ttttattttattttcaaataaaccgatcaaccgaactgatccaaacc 1148056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 11846729 - 11846819
Alignment:
Q  77 atgttgtatgcatgaaatacaactttgtgacaatatgaa-ttttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||||||| ||| |||||||||||||||||| ||||||    
T  11846729 atgttgtatgcatgaaatacaaatttgtgaaaatatgaatttttttaattgtattttcaaacaaaccgatcaaccgaactgatccaaaccg 11846819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 1209080 - 1209222
Alignment:
Q  13 aatatagaacacgaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatat 112  Q
    |||||||||||  |||||| |  |||||||||| ||||||  || ||||||||||||||||| |||||  |||| || |||||||| ||||| | |||||    
T  1209080 aatatagaacataaaaaaacaagatatgaaatacaaagttctatgaaatattttagtatgatatatgtcttatggataaaatacaaatttgtaagaatat 1209179  T
Q  113 gaatttttt-aattctattttcaaataaatcgatcaaccgaac 154  Q
    ||||||||| |||| |||| |||||||||| ||||||||||||    
T  1209180 gaattttttgaattatattatcaaataaattgatcaaccgaac 1209222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 11971900 - 11971991
Alignment:
Q  77 atgttgtatgcatgaaatacaactttgtgacaatatgaatttttt--aattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    |||||||||||||||||||||| ||||||| ||||| ||||||||  |||| |||||||||| ||| |||||||||||||||||| ||||||    
T  11971900 atgttgtatgcatgaaatacaaatttgtgaaaatataaattttttttaattgtattttcaaacaaaccgatcaaccgaactgatccaaaccg 11971991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 9827227 - 9827318
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatga--attttttaattctattttcaaataaatcgatcaaccgaactgatctaaac 164  Q
    |||||||||||||||||||||||| ||||||| |||||||   |||||||||| |||||||||| |||  ||||||||||||||||| ||||    
T  9827227 gtatgttgtatgcatgaaatacaaatttgtgaaaatatgatttttttttaattgtattttcaaacaaaatgatcaaccgaactgatccaaac 9827318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 2108573 - 2108478
Alignment:
Q  33 acaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctatttt 132  Q
    ||||||||||||| |||||| ||| ||||||||||||| || |||||       |||||||||||| ||||||| |||||||||||||||||| ||||||    
T  2108573 acaatatgaaatacaaagttccatgaaatattttagtacgacgtatg-------catgaaatacaaatttgtgataatatgaattttttaattgtatttt 2108481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 7176190 - 7176099
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt-aattctattttcaaataaatcgatcaaccgaactgatctaaacc 165  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||| |||  || ||||||| ||| ||||||||| ||| |||| |||||    
T  7176190 gtatgttgtatgcatgaaatgcaaatttgtgaaaatatgaattttttaaatagtactttcaaacaaaccgatcaaccaaaccgatccaaacc 7176099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 26186402 - 26186312
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaa-ttttttaattctattttcaaataaatcgatcaaccgaactgatctaaac 164  Q
    ||||||||||||| |||||||||| ||| | | |||||| | |||||||||| |||||| ||| |||| |||||||||||| |||| ||||    
T  26186402 gtatgttgtatgcttgaaatacaaatttttaaaaatatggagttttttaattgtatttttaaacaaattgatcaaccgaaccgatccaaac 26186312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 5416511 - 5416574
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatga--attttttaattctattttcaaa 136  Q
    |||||||||||||||||||||||| ||| ||| |||||||   |||||||||| ||||||||||    
T  5416511 gtatgttgtatgcatgaaatacaaatttatgaaaatatgatttttttttaattgtattttcaaa 5416574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 2453824 - 2453764
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaa 136  Q
    ||||||||||||||||||| |||| | ||||| ||||| |||||||| ||| ||||||||||    
T  2453824 gtatgttgtatgcatgaaacacaaatatgtgaaaatataaatttttt-attgtattttcaaa 2453764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 11972053 - 11972113
Alignment:
Q  228 aagatttcattggttcgaacattttttgactgaaaactagtccaaaccgaaccgttacacc 288  Q
    |||||||||||| | |||||||||||| ||  ||||||  |||||| ||||||||||||||    
T  11972053 aagatttcattgatacgaacatttttttaccaaaaactgatccaaatcgaaccgttacacc 11972113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 28199985 - 28200187
Alignment:
Q  15 tatagaacacgaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatga 114  Q
    ||||||||| ||||||| ||||||||||||| |||| | ||| ||||||||||||  ||||||||||||||| ||||||||||| ||||||| |||||||    
T  28199985 tatagaacatgaaaaaatacaatatgaaatacaaagatccatgaaatattttagttagatgtatgttgtatgtatgaaatacaaatttgtgagaatatga 28200084  T
Q  115 a-ttttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttttttgaaaaagagtaa 213  Q
    | ||||||||||||||||||||||||| ||||||||||||| ||||  ||||  ||||| |||||| |||||| | ||||||||||| |||||||||| |    
T  28200085 acttttttaattctattttcaaataaaccgatcaaccgaaccgatccgaaccaaacaaatctgatttgtttggttcggttcctttttcgaaaaagagtga 28200184  T
Q  214 aaa 216  Q
    |||    
T  28200185 aaa 28200187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 30340823 - 30340943
Alignment:
Q  35 aatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt---aattctattt 131  Q
    ||||||||||| ||||||  || |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||   ||||||| ||    
T  30340823 aatatgaaatacaaagttctatcaaatattt-agtatgatgtatgttgtatgcatgaaatacaactttgtgagaatatgattttttttaaaattcta-tt 30340920  T
Q  132 tcaaataaatcgatcaaccgaac 154  Q
    ||||||||| |||||||||||||    
T  30340921 tcaaataaaccgatcaaccgaac 30340943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 287
Target Start/End: Complemental strand, 22847906 - 22847694
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaac 174  Q
    ||||||||||||||||||||| || ||||||| ||||||||| |||||||| |||||| ||| ||| ||||||||| |||  ||| ||| |  || ||||    
T  22847906 gtatgttgtatgcatgaaataaaaatttgtgaaaatatgaat-ttttaattgtatttttaaacaaaccgatcaaccaaaccaatccaaatcaaaccaaac 22847808  T
Q  175 tgattagtttggctgggttccttttttgaaaaagagtaaaaaccgtactgataaagatttcattggttcgaac-attttttgactgaaaactagtccaaa 273  Q
     || |||||||| | |||| ||||||||||||| || |||||||| ||  || || |||||||||||||| || ||||||| ||  |||||   ||||||    
T  22847807 cgactagtttggtttggtttcttttttgaaaaacagcaaaaaccgaaccaatgaaaatttcattggttcgcacaattttttaaccaaaaaccgatccaaa 22847708  T
Q  274 ccgaaccgttacac 287  Q
    ||||||||||||||    
T  22847707 ccgaaccgttacac 22847694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 33221191 - 33221119
Alignment:
Q  82 gtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaaccgaac 154  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||| ||| |||| ||||||||    
T  33221191 gtatgcatgaaatacaaatttgtgagaatttgaattttttaattgtattttcaaacaaaccgataaaccgaac 33221119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 33036739 - 33036648
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaat-tttttaattctattttcaaataaatcgatcaaccgaactgatctaaacc 165  Q
    |||||||||||| || |||||||| ||||||| ||||||||| ||||||||| |||||||||| |||  |||||||||||| |||| |||||    
T  33036739 gtatgttgtatgtataaaatacaaatttgtgaaaatatgaatatttttaattgtattttcaaacaaactgatcaaccgaaccgatccaaacc 33036648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 3919566 - 3919474
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt-aattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    ||||||||||| ||| || ||||| ||||||| |||||||||||||| |||| ||||||| || ||| ||||||||||||| |||| ||||||    
T  3919566 gtatgttgtatacataaactacaaatttgtgaaaatatgaatttttttaattgtattttcgaacaaaccgatcaaccgaaccgatccaaaccg 3919474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 44018645 - 44018565
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaatt-ttttaattctattttcaaataaatcgatcaaccgaac 154  Q
    ||||| |||||||||||||||||| ||||||  |||||||||| |||||||| |||||||||| ||| |||||||| ||||    
T  44018645 gtatgatgtatgcatgaaatacaaatttgtgtaaatatgaatttttttaattgtattttcaaacaaaccgatcaactgaac 44018565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 29108921 - 29108875
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt 121  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  29108921 gtatgttgtatgcatgaaatacaaatttgtgaaaatatgaatttttt 29108875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 4241262 - 4241346
Alignment:
Q  209 agtaaaaaccgtactgataaagatttcattggttcgaacattttttgactgaaaa--ctagtccaaaccgaaccgttacacccct 291  Q
    ||||||||||| || ||||||||||||||| |||||||||||||||   | ||||  ||  |||||||| |||||||||||||||    
T  4241262 agtaaaaaccgaaccgataaagatttcattcgttcgaacattttttttttcaaaaaactgatccaaaccaaaccgttacacccct 4241346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 31112299 - 31112359
Alignment:
Q  232 tttcattggttcgaacatttt-ttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    |||||| |||||||||||||| |||||||||||| | |||||||||||| |||| ||||||    
T  31112299 tttcatcggttcgaacatttttttgactgaaaaccaatccaaaccgaactgttatacccct 31112359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 29108686 - 29108643
Alignment:
Q  116 ttttttaattctattttcaaataaatcgatcaaccgaactgatc 159  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||    
T  29108686 ttttttaattgtattttcaaacaaatcgatcaaccgaaccgatc 29108643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 38607540 - 38607621
Alignment:
Q  59 aatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaa-ttttttaattctattttcaaataaa 140  Q
    |||||||||||||||   ||||| ||| |||||||| ||| ||||||| |||||||| ||||||||||  |||||||||||||    
T  38607540 aatattttagtatgacacatgtt-tatacatgaaatgcaaatttgtgagaatatgaatttttttaattgcattttcaaataaa 38607621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 4638918 - 4638979
Alignment:
Q  228 aagatttcattggttcgaacattttttgactgaaaactagtccaaaccgaaccgttacaccc 289  Q
    |||||||||| |||||  |||||||||| |||||||  | |||||||||||||| |||||||    
T  4638918 aagatttcatcggttcagacattttttggctgaaaatcaatccaaaccgaaccgctacaccc 4638979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 36009812 - 36009869
Alignment:
Q  232 tttcattggttcgaacattttttgactgaaaactagtccaaaccgaaccgttacaccc 289  Q
    |||||| |||||  ||||||||||||||||||  | || |||||||||||||||||||    
T  36009812 tttcatcggttcagacattttttgactgaaaatcaatctaaaccgaaccgttacaccc 36009869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 37630815 - 37630887
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaacc 150  Q
    |||| ||||||||||||||||||| ||||||   | || |||||||||||| |||||||||| |||  ||||||||    
T  37630815 gtattttgtatgcatgaaatacaaatttgtg---aaattaattttttaattgtattttcaaacaaactgatcaacc 37630887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 31112156 - 31112276
Alignment:
Q  100 tttgtgacaatatgaatttttt-aattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttt 198  Q
    ||||||| |||||||||||||| ||||  ||||| |||||||  |||||||| |||  ||| |||||  || |||| ||||||||| | |  ||| ||||    
T  31112156 tttgtgagaatatgaatttttttaattgcatttttaaataaacagatcaaccaaaccaatcaaaaccaaaccaaaccgattagttttgttcagtttcttt 31112255  T
Q  199 tttgaaaaagagtaaaaaccg 219  Q
    ||||||||| ||| |||||||    
T  31112256 tttgaaaaacagtgaaaaccg 31112276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 36009667 - 36009777
Alignment:
Q  100 tttgtgacaatatgaa---ttttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttcct 196  Q
    ||||||| ||||||||   |||||||||| |||||| ||||||| ||||||||| |||  ||| ||| || || ||||   ||||||||| | |||| ||    
T  36009667 tttgtgagaatatgaatttttttttaattgtatttttaaataaaccgatcaaccaaaccaatccaaatcgaaccaaaccagttagtttggttcggtttct 36009766  T
Q  197 tttttgaaaaa 207  Q
    |||||||||||    
T  36009767 tttttgaaaaa 36009777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 47 - 254
Target Start/End: Complemental strand, 4407381 - 4407174
Alignment:
Q  47 aaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaa-ttttttaattctattttcaaataaatcgat 145  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||| ||||||||||||||  |||    
T  4407381 aaagttccgtaaaatattttaatatgatgtatgttgtatgcatgaaatataagtttgtgagaatatgaaattttttaattgtattttcaaataaactgat 4407282  T
Q  146 caaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttttttgaaaaagagtaaaaaccgtactgataaagatttcattggttcga 245  Q
    |||||||||||||| |||||| |  |||| ||||||||||| | ||||||||||| | ||||||||| ||| || ||  |||||||||||||||||| |     
T  4407281 caaccgaactgatccaaaccgaatcaaaccgattagtttggttcggttcctttttag-aaaagagtacaaagcgaacaaataaagatttcattggtttgg 4407183  T
Q  246 acatttttt 254  Q
    |||||||||    
T  4407182 acatttttt 4407174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 4919850 - 4919975
Alignment:
Q  25 gaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttg---tatgcatgaaatacaactttgtgacaatatgaatttttt 121  Q
    ||||||| | ||||||||||| |||| |  || |||||||||||  ||||||| ||||   ||||||||||||| || ||| ||| |||||  |||||||    
T  4919850 gaaaaaacaaaatatgaaatacaaagatatatgaaatattttagcgtgatgtacgttgctatatgcatgaaatataaatttatgaaaatat--atttttt 4919947  T
Q  122 aattctattttcaaataaatcgatcaac 149  Q
     |||||||||||||||||| ||||||||    
T  4919948 tattctattttcaaataaaccgatcaac 4919975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 12069928 - 12069808
Alignment:
Q  100 tttgtgacaatatgaatttttt-aattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttt 198  Q
    ||||||| ||||| |||||||| |||| |||||| ||| ||| |||||||||||||| ||| |||| | |  |||| ||||| ||||| | |||| ||||    
T  12069928 tttgtgagaatattaatttttttaattgtatttttaaacaaaccgatcaaccgaactaatccaaacggaatcaaaccgattaatttggttcggttacttt 12069829  T
Q  199 tttgaaaaagagtaaaaaccg 219  Q
    ||||||||| ||| |||||||    
T  12069828 tttgaaaaacagtgaaaaccg 12069808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 32678148 - 32678061
Alignment:
Q  80 ttgtatgcatgaaatacaactttgtgacaatat-gaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    ||||||||||||||||||| ||| ||| ||||| || |||||||||| ||||||  || ||||||||||||| ||| |||| ||||||    
T  32678148 ttgtatgcatgaaatacaaatttatgaaaatatagatttttttaattgtattttagaacaaatcgatcaaccaaaccgatccaaaccg 32678061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 8084930 - 8084971
Alignment:
Q  250 tttttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  8084930 tttttgactgaaaaccaatccaaaccgaaccgttacacccct 8084971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 18461673 - 18461782
Alignment:
Q  108 aatatgaatttttt-aattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttttttgaaaa 206  Q
    |||||||||||||| |||| |||||| ||||||| ||||||||||||   ||| |||||| || |||  ||||||||||| | ||||  |||||||||||    
T  18461673 aatatgaatttttttaattgtatttttaaataaaccgatcaaccgaagcaatccaaaccgaaccaaatcgattagtttggttcggttttttttttgaaaa 18461772  T
Q  207 agagtaaaaa 216  Q
    | ||| ||||    
T  18461773 acagtgaaaa 18461782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 8084764 - 8084882
Alignment:
Q  100 tttgtgacaatatgaatttttt--aattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttcctt 197  Q
    ||||||| ||||||||||||||  |||| |||||| |||||||  ||||||||||||  ||| |||||| ||  ||| |||||| |||| |  ||| |||    
T  8084764 tttgtgaaaatatgaattttttttaattgtatttttaaataaactgatcaaccgaaccaatccaaaccgaactcaaccgattagcttggttcagtttctt 8084863  T
Q  198 ttttgaaaaagagtaaaaa 216  Q
    |||||||||| ||| ||||    
T  8084864 ttttgaaaaacagtgaaaa 8084882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 11912059 - 11912096
Alignment:
Q  76 tatgttgtatgcatgaaatacaactttgtgacaatatg 113  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  11912059 tatgttgtatgcatgaaatacaaatttgtgaaaatatg 11912096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 12069777 - 12069725
Alignment:
Q  240 gttcgaacatttttt-gactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    ||||| ||||||||| | |||||||| | ||||||||||||||||||||||||    
T  12069777 gttcggacatttttttggctgaaaaccaatccaaaccgaaccgttacacccct 12069725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 17531086 - 17531166
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaa-ttttttaattctattttcaaataaatcgatcaaccgaac 154  Q
    |||| |||||| |||||||||||| | ||| | |||||||| |||||||| | || ||||||  |||||||||||||||||    
T  17531086 gtatattgtatacatgaaatacaaatctgtaaaaatatgaatttttttaactgtactttcaatcaaatcgatcaaccgaac 17531166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 27226669 - 27226517
Alignment:
Q  13 aatatagaacacgaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatat 112  Q
    |||| |||||| ||||||  | ||||||||||| || |||  || ||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||    
T  27226669 aatagagaacatgaaaaactaaaatatgaaatacaatgttcgatgaaatattttagtatgatgtatgttgtatgcatgaagtacaaatttgtga-aaaat 27226571  T
Q  113 gaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    ||||||| |||||||||||||||||||| ||||||| ||||| |||| ||||||    
T  27226570 gaattttataattctattttcaaataaaccgatcaaacgaaccgatccaaaccg 27226517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 46264987 - 46264845
Alignment:
Q  25 gaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaa-ttttttaa 123  Q
    ||||||| | |||| |||||| |||||| ||| |||||||||||||||| ||||||| |||||||||||||||| ||||||| ||| |||| ||||||||    
T  46264987 gaaaaaacaaaatacgaaatacaaagttccatgaaatattttagtatgaagtatgttttatgcatgaaatacaaatttgtgagaatgtgaatttttttaa 46264888  T
Q  124 ttctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    || |||||| ||||||| | ||||||| ||| |||||||||||    
T  46264887 ttgtatttttaaataaaccaatcaacctaaccgatctaaaccg 46264845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 78 - 291
Target Start/End: Complemental strand, 39571496 - 39571268
Alignment:
Q  78 tgttgtatgcatgaaatacaactttgtgacaatatga--atttttt--aattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaa 173  Q
    ||||||| ||||||||||||| ||||| | |||||||  |||||||  |||| || |||||||||||  ||||||||||||||||| |||||  ||||||    
T  39571496 tgttgtaagcatgaaatacaaatttgtaaaaatatgattatttttttcaattgtactttcaaataaactgatcaaccgaactgatccaaaccaaacaaaa 39571397  T
Q  174 ctgattagtttggctgggttccttttttgaaaaagagtaa----------aaaccgtactgataaagatttcattggttcgaaca-ttttttgactgaaa 262  Q
    ||||||||||||| |  ||| ||||||| ||||| |||||          |||||  |||||| ||||||||||| ||||| ||| |||||||||  |||    
T  39571396 ctgattagtttggttcagtttcttttttaaaaaacagtaaaaactgaaccaaaccaaactgatgaagatttcatttgttcggacatttttttgacaaaaa 39571297  T
Q  263 actagtccaaaccgaaccgttacacccct 291  Q
    || | |||||||||||| |||||||||||    
T  39571296 accaatccaaaccgaacagttacacccct 39571268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 25544904 - 25544843
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaa 136  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  25544904 gtatgttgtatgcatgaaatacaaatttgtgaaaatatgaattttttaattgtattttcaaa 25544843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 30396733 - 30396836
Alignment:
Q  13 aatatagaacacgaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatat 112  Q
    |||| |||||| ||||||| | ||||||||||| |||||| ||| |||| |||||||| || ||||| | |||||||||||||||| ||||||| |||||    
T  30396733 aatagagaacatgaaaaaacaaaatatgaaatacaaagttccatgaaatgttttagtaagaggtatgctttatgcatgaaatacaaatttgtgagaatat 30396832  T
Q  113 gaat 116  Q
    ||||    
T  30396833 gaat 30396836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 31136626 - 31136708
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattt---tttaattctattttcaaataaatcgatcaaccgaac 154  Q
    |||||||||||||||||||||||| ||||||| |||||||||||   ||| ||| |||||||||| ||| |||||||||||||    
T  31136626 gtatgttgtatgcatgaaatacaaatttgtgaaaatatgaatttttattttattttattttcaaacaaaccgatcaaccgaac 31136708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 116 - 291
Target Start/End: Original strand, 46994174 - 46994360
Alignment:
Q  116 ttttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttttttgaaaaagagtaaaa 215  Q
    |||||||||| |||||| ||| ||| |||||||||||||  ||| |||| | || |||| ||||||||||| | |||| ||||||||||||| ||| |||    
T  46994174 ttttttaattgtatttttaaacaaaccgatcaaccgaaccaatccaaactgaaccaaaccgattagtttggtttggtttcttttttgaaaaacagtgaaa 46994273  T
Q  216 accg----------tactgataaagatttcattggttcgaaca-ttttttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    ||||           || ||| ||| |||||| |||||  ||| |||||||||||||||| | ||||||||||||||||||||||||    
T  46994274 accgaatcaatccaaaccgattaaggtttcatcggttcagacatttttttgactgaaaaccaatccaaaccgaaccgttacacccct 46994360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 8158119 - 8158180
Alignment:
Q  396 ccactgttaccttagacacttcctaattcgagtaattcaccgttagattaggtatctcactt 457  Q
    |||| |||| |||||| |||||||||||  ||||||||||||||| ||||||||||||||||    
T  8158119 ccaccgttatcttagatacttcctaatttcagtaattcaccgttatattaggtatctcactt 8158180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 19601869 - 19601817
Alignment:
Q  84 atgcatgaaatacaactttgtgacaatatgaatt-ttttaattctattttcaa 135  Q
    ||||||||||||||| |||||||||||||||||| |||||||| |||||||||    
T  19601869 atgcatgaaatacaaatttgtgacaatatgaatttttttaattgtattttcaa 19601817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 45595816 - 45595891
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaacc 150  Q
    ||||||||||  |||||| ||||| ||||||| ||||| |||||||||||| |||||||||  ||| |||||||||    
T  45595816 gtatgttgtagacatgaagtacaaatttgtgaaaatattaattttttaattgtattttcaaccaaaccgatcaacc 45595891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 7348352 - 7348310
Alignment:
Q  249 ttttttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    |||||||||||||||||| ||||||||||||||||||| ||||    
T  7348352 ttttttgactgaaaactaatccaaaccgaaccgttacatccct 7348310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 49124700 - 49124761
Alignment:
Q  76 tatgttgtatgcatgaaatacaactttgtgacaatatgaattttt-taattctattttcaaa 136  Q
    ||||||||||||||||||| ||| ||||||| |||||| |||||| ||||| ||||||||||    
T  49124700 tatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattgtattttcaaa 49124761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 27226433 - 27226393
Alignment:
Q  249 ttttttgactgaaaactagtccaaaccgaaccgttacaccc 289  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  27226433 ttttttgactgaaaatcagtccaaaccgaaccgttacaccc 27226393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 254
Target Start/End: Complemental strand, 2500814 - 2500624
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttg-tgacaatatgaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaa 173  Q
    ||||||||||||||||||   ||| |||  ||| ||||||||||||||||||  ||||||||| ||| ||||||||| ||| |||| ||  || ||  ||    
T  2500814 gtatgttgtatgcatgaatcccaatttttatgaaaatatgaattttttaattgcattttcaaacaaaccgatcaaccaaaccgatccaattcgaacccaa 2500715  T
Q  174 ctgattagtttggctgggttccttttttgaaaaagagtaaaaac----------cgtactgataaagatttcattggttcgaacatttttt 254  Q
    |  | |||||||| | || | ||||||||||||| |||||||||          || |||||| |||||||||||||||| ||||||||||    
T  2500714 ccaactagtttggttcgggttcttttttgaaaaacagtaaaaacttaaccaaaccgaactgatgaagatttcattggttcaaacatttttt 2500624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 11727045 - 11726938
Alignment:
Q  100 tttgtgacaatatgaatttttt-aattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttt 198  Q
    ||||||| |||||||||||||| |||| |||||| |||||||  |||| |||||||  ||  |||| | || |||||||||||||||| | |||| ||||    
T  11727045 tttgtgagaatatgaatttttttaattgtatttttaaataaactgatcgaccgaaccaattcaaacggaaccaaactgattagtttggttcggtttcttt 11726946  T
Q  199 tttgaaaa 206  Q
    ||| ||||    
T  11726945 tttaaaaa 11726938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 48071109 - 48071180
Alignment:
Q  88 atgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaaccgaactgatc 159  Q
    ||||||||||| ||||||| ||||||  ||||||| || |||||||||| ||| ||||||| ||||| ||||    
T  48071109 atgaaatacaaatttgtgaaaatatggtttttttatttgtattttcaaacaaaccgatcaatcgaaccgatc 48071180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 12470720 - 12470674
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt 121  Q
    |||||||||||| ||||||||||| ||||||| |||||| |||||||    
T  12470720 gtatgttgtatggatgaaatacaaatttgtgaaaatatggatttttt 12470674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 45595962 - 45596032
Alignment:
Q  221 actgataaagatttcattggttcgaacattttttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    |||||| ||||||||||||||||||||||||||| ||  ||||    |||||| |||||||||||| ||||    
T  45595962 actgatgaagatttcattggttcgaacatttttttaccaaaaatcgatccaaatcgaaccgttacatccct 45596032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 48071244 - 48071276
Alignment:
Q  222 ctgataaagatttcattggttcgaacatttttt 254  Q
    ||||| |||||||||||||||||||||||||||    
T  48071244 ctgatgaagatttcattggttcgaacatttttt 48071276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold1335
Description:

Target: scaffold1335; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 583 - 302
Alignment:
Q  20 aacacgaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaa-ttt 118  Q
    |||| ||||||| ||||||||||||| ||| || || |||||||||||||||||| ||||||||||||| ||| ||  | ||| | | |||||||| |||    
T  583 aacatgaaaaaacacaatatgaaatacaaaattccaaaaaatattttagtatgatctatgttgtatgcaagaactatgagtttttaagaatatgaatttt 484  T
Q  119 tttaattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttttttgaaaaagagtaaaaacc 218  Q
    ||||||  ||||||||||||||  |||||||| || |||| ||||| |  | |||   |||||||||| | |||||||||||||| ||||||||||||||    
T  483 tttaatggtattttcaaataaactgatcaaccaaattgatttaaactgagccaaatcaattagtttggtttggttccttttttgagaaagagtaaaaacc 384  T
Q  219 gtac----------tgataaagatttcattggttcgaacattttttgactgaaaactagtccaaaccgaaccgttacacccc 290  Q
      ||           ||||||||||||||||||| | | ||||||| ||||||||| ||||||||||||||  |||||||||    
T  383 aaaccaaatcaaatcgataaagatttcattggtttggagatttttttactgaaaaccagtccaaaccgaactattacacccc 302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 35847680 - 35847961
Alignment:
Q  20 aacacgaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaa-ttt 118  Q
    |||| ||||||| ||||||||||||| ||| || || |||||||||||||||||| ||||||||||||| ||| ||  | ||| | | |||||||| |||    
T  35847680 aacatgaaaaaacacaatatgaaatacaaaattccaaaaaatattttagtatgatctatgttgtatgcaagaactatgagtttttaagaatatgaatttt 35847779  T
Q  119 tttaattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttttttgaaaaagagtaaaaacc 218  Q
    ||||||  ||||||||||||||  |||||||| || |||| ||||| |  | |||   |||||||||| | |||||||||||||| ||||||||||||||    
T  35847780 tttaatggtattttcaaataaactgatcaaccaaattgatttaaactgagccaaatcaattagtttggtttggttccttttttgagaaagagtaaaaacc 35847879  T
Q  219 gtac----------tgataaagatttcattggttcgaacattttttgactgaaaactagtccaaaccgaaccgttacacccc 290  Q
      ||           ||||||||||||||||||| | | ||||||| ||||||||| ||||||||||||||  |||||||||    
T  35847880 aaaccaaatcaaatcgataaagatttcattggtttggagatttttttactgaaaaccagtccaaaccgaactattacacccc 35847961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 252
Target Start/End: Complemental strand, 33231207 - 33231023
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt--aattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaa 172  Q
    |||||||||||||||||||||||| ||| ||| ||||| | ||||||  |||| |||||||||| ||| ||||||||||||| ||||||||||  || ||    
T  33231207 gtatgttgtatgcatgaaatacaaatttctgaaaatataatttttttttaattgtattttcaaacaaaccgatcaaccgaaccgatctaaaccaaaccaa 33231108  T
Q  173 actgattagtttggctgggttccttttttgaaaaagagtaaaaacc-----gtactgataaagatttcattggttcgaacatttt 252  Q
    ||  | |||||||| | |||| ||||||||||||| ||||||||||     | |||||| ||||||||||||||||  |||||||    
T  33231107 accaactagtttggttcggtttcttttttgaaaaacagtaaaaaccaaaccgaactgatgaagatttcattggttcagacatttt 33231023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 27524392 - 27524520
Alignment:
Q  35 aatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt--aattctatttt 132  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||     || |||||||||||| ||||||| ||| ||||||||||  |||| ||||||    
T  27524392 aatatgaaatacaaagttccatgaaatattttagtatgatgtat-----atacatgaaatacaaatttgtgaaaatttgaattttttttaattttatttt 27524486  T
Q  133 caaataaatcgatcaaccgaactgatctaaaccg 166  Q
    |||||||| |||||||||||| ||||| ||||||    
T  27524487 caaataaaccgatcaaccgaattgatccaaaccg 27524520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 22240868 - 22240982
Alignment:
Q  40 gaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt-aattctattttcaaata 138  Q
    |||||| |||||| ||| ||||||||||||||| |||||| ||||||||| |||||||| || |||| ||||| |||||||| |||| ||||||||||||    
T  22240868 gaaatacaaagttccatgaaatattttagtatggtgtatgatgtatgcat-aaatacaaattagtgagaatataaattttttaaattgtattttcaaata 22240966  T
Q  139 aatcgatcaaccgaac 154  Q
    || | |||||||||||    
T  22240967 aacctatcaaccgaac 22240982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 779196 - 779126
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgat 145  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||||| ||| ||||    
T  779196 gtatgttgtatgcatgcaatacaaatttgtgaaaatatgaattttttaattgtattttcaaacaaaccgat 779126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 11502968 - 11502850
Alignment:
Q  36 atatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaatt----ttttaattctattt 131  Q
    |||||||||| ||||||  || ||||||||||| ||||  |||||| |||||||||||||||| ||||| | ||||||||||    |||||||| |||||    
T  11502968 atatgaaatacaaagttcaatgaaatattttagcatgacatatgttttatgcatgaaatacaaatttgtaagaatatgaatttttattttaattgtattt 11502869  T
Q  132 tcaaataaatcgatcaacc 150  Q
    | ||||||| | |||||||    
T  11502868 ttaaataaaccaatcaacc 11502850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 28550998 - 28551090
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt-aattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    |||||||||||| |||||||| || ||| ||| |||||| ||||||| |||| ||| |||||| ||||||||||||||||| |||| ||||||    
T  28550998 gtatgttgtatgaatgaaatataaatttatgaaaatatggatttttttaattatatgttcaaacaaatcgatcaaccgaaccgatccaaaccg 28551090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 30553806 - 30553723
Alignment:
Q  77 atgttgtatgcatgaaatacaactttgtgacaatat-gaattttttaattctattttcaaataaatcgatcaaccgaactgatc 159  Q
    |||||||||||||||||||||| ||||||| ||||| || |||||||||| |||||| ||| ||||||| ||||| ||| ||||    
T  30553806 atgttgtatgcatgaaatacaaatttgtgaaaatatagatttttttaattgtatttttaaacaaatcgaccaaccaaaccgatc 30553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 44471505 - 44471598
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatga---attttttaattctattttcaaataaatcgatcaaccgaactgatctaaacc 165  Q
    |||||| ||||||||||||||||| ||||||| |||||||    |||||||||| |||||||||| ||| ||||| ||||||| |||| |||||    
T  44471505 gtatgtcgtatgcatgaaatacaaatttgtgaaaatatgattttttttttaattgtattttcaaacaaaccgatctaccgaaccgatccaaacc 44471598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 44681693 - 44681620
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatga--attttttaattctattttcaaataaatcgatc 146  Q
    |||||||||||||||||||||||| ||||||| |||||||   |||||||||| |||||||||| ||| |||||    
T  44681693 gtatgttgtatgcatgaaatacaaatttgtgaaaatatgatttttttttaattgtattttcaaacaaaccgatc 44681620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 46893064 - 46893126
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattt-tttaattctattttcaaa 136  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||| ||||||| ||||||||||    
T  46893064 gtatgttgtatgcatgaaaaacaaatttgtgaaaatatgaatttatttaattgtattttcaaa 46893126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 38853739 - 38853845
Alignment:
Q  61 tattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaa--ttttttaattctattttcaaataaatcgatcaaccgaactgat 158  Q
    |||||||||||||  ||| || ||| |||||||||||| ||||||| |||||| |  ||||||| || |||||| ||||||| |||||| |||||| |||    
T  38853739 tattttagtatgacatatattttatacatgaaatacaaatttgtgagaatatggattttttttacttgtatttttaaataaaccgatcagccgaaccgat 38853838  T
Q  159 ctaaacc 165  Q
    | |||||    
T  38853839 caaaacc 38853845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 44286018 - 44286073
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctatt 130  Q
    ||||||||||||||| |||||||| ||||| | |||||||||||||||||| ||||    
T  44286018 gtatgttgtatgcataaaatacaaatttgtaaaaatatgaattttttaattgtatt 44286073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 26918176 - 26918103
Alignment:
Q  76 tatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaacc 150  Q
    |||||||||| ||| |||||||| ||||||| | |||| ||||||||||| |||||||||| ||| |||||||||    
T  26918176 tatgttgtatacat-aaatacaaatttgtgaaactatggattttttaattgtattttcaaacaaaccgatcaacc 26918103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 46656205 - 46656247
Alignment:
Q  248 attttttgactgaaaactagtccaaaccgaaccgttacacccc 290  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  46656205 attttttgactgaaaaccaatccaaaccgaaccgttacacccc 46656247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 11689916 - 11689819
Alignment:
Q  58 aaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaatt-ttttaattctattttcaaataaatcgatcaaccgaac 154  Q
    ||||||||||||| ||  |||||| |||||||||||||||  || |||| |||||||||| |||||||| |||||| ||| |||  ||||||| ||||    
T  11689916 aaatattttagtaagacatatgttttatgcatgaaatacatattcgtgagaatatgaatttttttaattgtatttttaaaaaaactgatcaactgaac 11689819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 46893224 - 46893292
Alignment:
Q  224 gataaagatttcattggttcgaacatttttt-gactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    ||| ||||||| ||||||||||||||||||| ||   ||||||  ||||||||||||||||||||||||    
T  46893224 gatgaagattttattggttcgaacatttttttgaacaaaaactgatccaaaccgaaccgttacacccct 46893292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 2095974 - 2096016
Alignment:
Q  249 ttttttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    ||||||| |||||||| | ||||||||||||||||||||||||    
T  2095974 ttttttggctgaaaaccaatccaaaccgaaccgttacacccct 2096016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 27524607 - 27524649
Alignment:
Q  249 ttttttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    |||||||| |||||||| || ||||||||||||||||||||||    
T  27524607 ttttttgaatgaaaactggttcaaaccgaaccgttacacccct 27524649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 54246993 - 54247039
Alignment:
Q  100 tttgtgacaatatgaattttttaattctattttcaaataaatcgatc 146  Q
    ||||||| ||||| |||||||||||| |||||||||| |||||||||    
T  54246993 tttgtgaaaatattaattttttaattgtattttcaaacaaatcgatc 54247039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 16007625 - 16007561
Alignment:
Q  228 aagatttcattggttcgaacatttttt-gactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    |||||||||| |||||| ||||||||| || || || | | ||||||||||||||||||||||||    
T  16007625 aagatttcatcggttcggacatttttttgattggaatccaatccaaaccgaaccgttacacccct 16007561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 8605873 - 8605745
Alignment:
Q  25 gaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaattt---ttt 121  Q
    ||||||| ||||||||||||| |||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||| |||   |||    
T  8605873 gaaaaaacacaatatgaaatacaaagttccatgaaatattttagtatgaagtatgttgtatgcatgaaatacaaatttgtaagaatatgattttttattt 8605774  T
Q  122 aattctattttcaaataaatcgatcaacc 150  Q
     ||| |||||||||||||| |||||||||    
T  8605773 tattttattttcaaataaaccgatcaacc 8605745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 8057282 - 8057458
Alignment:
Q  38 atgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatga--------attttttaattctat 129  Q
    |||||||| |||||| ||| |||||||||||||||| ||||||| |||| ||||||||||| ||||||| |||||||         |||||||||  |||    
T  8057282 atgaaatacaaagttacatgaaatattttagtatgacgtatgttttatgtatgaaatacaaatttgtgagaatatgatttttttttttttttaatagtat 8057381  T
Q  130 tttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttttttgaaaa 206  Q
    || ||||||||| | |||||||||| |||| || | | ||||||| ||||||||||| | |||||||||||||||||    
T  8057382 ttccaaataaattggtcaaccgaaccgatccaacctgaacaaaaccgattagtttggttcggttccttttttgaaaa 8057458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 154
Target Start/End: Original strand, 38388445 - 38388564
Alignment:
Q  36 atatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttta-attctattttca 134  Q
    |||| ||||| || ||| ||| |||||||||||||||| ||||||| |||||||||||||||| ||||||| |||| |||||||||| ||| ||||||||    
T  38388445 atattaaatacaacgttccatgaaatattttagtatgacgtatgttttatgcatgaaatacaaatttgtgagaataagaattttttacattgtattttca 38388544  T
Q  135 aataaatcgatcaaccgaac 154  Q
    |||||| | |||||||||||    
T  38388545 aataaaccaatcaaccgaac 38388564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 42141725 - 42141798
Alignment:
Q  78 tgttgtatgcatgaaatacaactttgtgacaatatgaa-ttttttaattctattttcaaataaatcgatcaacc 150  Q
    ||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||||||| ||| |||||||||    
T  42141725 tgttgtatgcatgaaatacaaatttgtgaaaatatgaatttttttaattgtattttcaaacaaaccgatcaacc 42141798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 19681762 - 19681676
Alignment:
Q  79 gttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||||| |||||||||| ||||||||||  ||||| |||| ||||||    
T  19681762 gttgtatgcgtgaaatacaaatttgtgaaaatatggattttttaattgtattttcaaa-aaatcgatcatacgaaccgatccaaaccg 19681676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 9140713 - 9140621
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatat-gaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    ||||||||||||| |||||||||| ||| ||| ||||| || |||||||||| || ||||||| ||| || ||||||||||||||| ||||||    
T  9140713 gtatgttgtatgcttgaaatacaaatttttgaaaatatagatttttttaattgtaatttcaaacaaaccggtcaaccgaactgatccaaaccg 9140621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 13207086 - 13207007
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaaccgaac 154  Q
    |||||||||||||||||||||||| | ||||| ||||   ||||| ||||| |||||||||| ||| |||||||||||||    
T  13207086 gtatgttgtatgcatgaaatacaaatatgtgaaaataaagattttgtaattgtattttcaaacaaaccgatcaaccgaac 13207007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 13981465 - 13981543
Alignment:
Q  73 atgtatgttgtatgcatgaaatacaac-tttgtgacaatatgaattttttaattctattttcaaataaatcgatcaacc 150  Q
    ||||||||||||||||| ||||||||  ||||||| ||||||||| ||||||||||||||| ||||   ||||||||||    
T  13981465 atgtatgttgtatgcattaaatacaaaatttgtgaaaatatgaatattttaattctatttttaaattcgtcgatcaacc 13981543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 4414178 - 4414237
Alignment:
Q  232 tttcattggttcgaacattttttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    |||||| |||||  ||||||||||||||||||  | ||||||||||||||||||||||||    
T  4414178 tttcatcggttcagacattttttgactgaaaatcaatccaaaccgaaccgttacacccct 4414237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 53392841 - 53392769
Alignment:
Q  76 tatgttgtatgcatgaaatacaactttgtgacaatatga--attttttaattctattttcaaataaatcgatc 146  Q
    ||||||||||||||||||||||| ||||||| |||| ||   |||||||||| |||||||||| ||| |||||    
T  53392841 tatgttgtatgcatgaaatacaaatttgtgagaataagatttttttttaattgtattttcaaacaaaccgatc 53392769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 19681615 - 19681551
Alignment:
Q  228 aagatttcattggttcgaacatttttt-gactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    ||||||||||||||||| ||||||||| |||  ||||| | ||||||||||||||||||| ||||    
T  19681615 aagatttcattggttcggacatttttttgaccaaaaaccaatccaaaccgaaccgttacatccct 19681551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 28318928 - 28318838
Alignment:
Q  116 ttttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttccttttttgaaaaa 207  Q
    |||||||||| |||||| |||||||  ||||||||||||  ||| |||||| ||  ||| ||||||||||| | |||| |||||||||||||    
T  28318928 ttttttaattgtatttttaaataaactgatcaaccgaac-catccaaaccgaacccaaccgattagtttggtttggtttcttttttgaaaaa 28318838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 3042126 - 3042175
Alignment:
Q  116 ttttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    |||||||||| |||||||||| ||| ||||||||| |||||||||||||||    
T  3042126 ttttttaattgtattttcaaacaaa-cgatcaaccaaactgatctaaaccg 3042175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 38388650 - 38388692
Alignment:
Q  249 ttttttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    ||||||||||||||||   ||||||||||||||||||||||||    
T  38388650 ttttttgactgaaaaccgatccaaaccgaaccgttacacccct 38388692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 1406886 - 1406950
Alignment:
Q  87 catgaaatacaactttgtgacaatatgaatttttt-aattctattttcaaataaatcgatcaacc 150  Q
    |||||||||||| ||| ||| ||||| |||||||| |||| |||||||||||||| | |||||||    
T  1406886 catgaaatacaaatttatgagaatattaatttttttaattatattttcaaataaaccaatcaacc 1406950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 25343772 - 25343625
Alignment:
Q  20 aacacgaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaatt-- 117  Q
    |||| ||||||| | || |||||||| ||| || ||| |||||||| ||||||| ||||||| |||||||||||||||| ||||||| ||||||||||      
T  25343772 aacatgaaaaaacaaaacatgaaatacaaa-ttccatgaaatatttgagtatgacgtatgttttatgcatgaaatacaaatttgtgagaatatgaatttt 25343674  T
Q  118 ttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    |||||||  |||||||||||||| ||||||||||||| |||| ||||||    
T  25343673 ttttaatagtattttcaaataaaccgatcaaccgaaccgatccaaaccg 25343625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 25654485 - 25654375
Alignment:
Q  58 aaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaatt--ttttaattctattttcaaataaatcgatcaaccgaact 155  Q
    |||||||| ||||||| ||||||| |||||||||||||||| ||||||| ||||||||||  |||||||  |||||||||||||| |||||||||||||     
T  25654485 aaatatttgagtatgacgtatgttttatgcatgaaatacaaatttgtgagaatatgaattttttttaatagtattttcaaataaaccgatcaaccgaacc 25654386  T
Q  156 gatctaaaccg 166  Q
    |||| ||||||    
T  25654385 gatccaaaccg 25654375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 25807928 - 25807812
Alignment:
Q  38 atgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaa--ttttttaattctattttcaa 135  Q
    |||||||| ||| || ||| |||||||||||||||||||||||| || |||||| |||||| ||||||| ||| ||||  |||||||||| |||||||||    
T  25807928 atgaaatacaaaattccatgaaatattttagtatgatgtatgttttaggcatgagatacaaatttgtgagaat-tgaaatttttttaattgtattttcaa 25807830  T
Q  136 ataaatcgatcaaccgaa 153  Q
    |||||  |||||||||||    
T  25807829 ataaactgatcaaccgaa 25807812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 9505517 - 9505607
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaacc 165  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||||  ||| |||||||  |||| |||| |||||    
T  9505517 gtatgttgtatacatgaaatacaaatttgtgaaaatatgaattttttaattgtattttcaatcaaaccgatcaattgaaccgatccaaacc 9505607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 44222744 - 44222678
Alignment:
Q  226 taaagatttcattggttcgaacatttttt-gactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    ||||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||    
T  44222744 taaaggtttcattggttcgaacatttttttgactgaaaaccaatccaaaccgaaccgttacacccct 44222678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 3767353 - 3767296
Alignment:
Q  79 gttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaa 136  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  3767353 gttgtatgcatgaaatacaaatttgtgaaaatatgaattttttaattgtattttcaaa 3767296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 42614820 - 42614679
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaac 174  Q
    |||||||| ||||||||||| ||| ||| ||| | |||| |||||| |||| ||||||||||||||||||| ||||||| ||||| |||| | || ||||    
T  42614820 gtatgttgaatgcatgaaatgcaaatttatgaaattatggatttttcaattgtattttcaaataaatcgat-aaccgaagtgatccaaactgaaccaaac 42614722  T
Q  175 tgattagtttggctgggttccttttttgaaaaagagtaaaaac 217  Q
    | | |||||||| |   || ||||||| ||||| |||||||||    
T  42614721 taaatagtttggttacatttcttttttaaaaaacagtaaaaac 42614679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 3555116 - 3555023
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt--aattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    |||||||| |||||| |||||||| ||| ||| |||||| |||||||  |||| |||||||||| ||| ||||||||||||| |||| ||||||    
T  3555116 gtatgttgcatgcataaaatacaaatttatgaaaatatggattttttttaattgtattttcaaacaaaccgatcaaccgaaccgatccaaaccg 3555023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 32322288 - 32322362
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaata-tgaattttttaattctattttcaaataaatcgatcaa 148  Q
    ||||||||||||||||||| |||| ||||||| |||| ||  |||||||||| |||||||||| ||| |||||||    
T  32322288 gtatgttgtatgcatgaaaaacaaatttgtgaaaatattgttttttttaattgtattttcaaacaaaccgatcaa 32322362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 35949614 - 35949680
Alignment:
Q  223 tgataaagatttcattggttcgaacattttttgactgaaaactagtccaaaccgaaccgttacaccc 289  Q
    |||| ||| |||||| |||||  ||||||||||| ||||||| | ||||||||||||||||||||||    
T  35949614 tgatgaaggtttcatcggttcagacattttttgattgaaaaccaatccaaaccgaaccgttacaccc 35949680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 40434638 - 40434558
Alignment:
Q  81 tgtatgcatgaaatacaactttgtgacaatatgaatttttt--aattctattttcaaataaatcgatcaaccgaactgatc 159  Q
    |||||| ||||||||||| ||| ||| |||| || ||||||  |||| |||||||||||||| | ||||||||||||||||    
T  40434638 tgtatgtatgaaatacaaatttttgagaataagatttttttttaattgtattttcaaataaaccaatcaaccgaactgatc 40434558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 20860077 - 20860015
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatat-gaattttttaattctattttcaaa 136  Q
    ||||| |||| ||||||||||||| ||||||| ||||| || |||||||||| ||||||||||    
T  20860077 gtatgatgtaagcatgaaatacaaatttgtgaaaatatggatttttttaattgtattttcaaa 20860015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 42614662 - 42614629
Alignment:
Q  224 gataaagatttcattggttcgaacattttttgac 257  Q
    ||||||||||| ||||||||||||||||||||||    
T  42614662 gataaagatttaattggttcgaacattttttgac 42614629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 25389610 - 25389570
Alignment:
Q  58 aaatattttagtatgatgtatgttgtatgcatgaaatacaa 98  Q
    |||||||| ||||||| ||||||| ||||||||||||||||    
T  25389610 aaatatttgagtatgacgtatgttttatgcatgaaatacaa 25389570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 34244 - 34347
Alignment:
Q  58 aaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaa--ttttttaattctattttcaaataaatcgatcaaccgaact 155  Q
    |||||||||||||||| ||||||| |||||||||||||||| ||||||| ||||||||  |||||||||  |||||||||||||| |||||||||||||     
T  34244 aaatattttagtatgacgtatgttttatgcatgaaatacaaatttgtgagaatatgaattttttttaatagtattttcaaataaaccgatcaaccgaacc 34343  T
Q  156 gatc 159  Q
    ||||    
T  34344 gatc 34347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 14261 - 14391
Alignment:
Q  25 gaaaaaagacaatatgaaatagaaagtttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaa--tttttta 122  Q
    ||||||| | || |||||||| ||| || ||| |||||||||||||||| ||||||| |||||||||||||||  ||||||| ||||||||  |||||||    
T  14261 gaaaaaacaaaacatgaaatacaaaattccattaaatattttagtatgaggtatgttttatgcatgaaatacagatttgtgagaatatgaaattttttta 14360  T
Q  123 attctattttcaaataaatcgatcaaccgaac 154  Q
    ||| || ||||||||||| | |||||||||||    
T  14361 attgta-tttcaaataaaccaatcaaccgaac 14391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 39786526 - 39786642
Alignment:
Q  51 tttcataaaatattttagtatgatgtatgttgtatgcatgaaatacaactttgtgacaatatgaa-ttttttaattctattttcaaataaatcgatcaac 149  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||  ||||||| ||||||| ||  ||||| ||||||| | ||||||    
T  39786526 tttcataaaatattttagtatgatgtatattgtatgcatgaaatactagtttgtgagtatatgaacttttttagttgcatttttaaataaaacaatcaac 39786625  T
Q  150 cgaactgatctaaaccg 166  Q
    | || ||||| ||||||    
T  39786626 caaattgatccaaaccg 39786642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 42307040 - 42307128
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaa 163  Q
    |||||||||||||||||||||||| || |||| |||||  ||||||||||| |||||||||  ||| |||||||| |||||||||||||    
T  42307040 gtatgttgtatgcatgaaatacaatttcgtgagaatatagattttttaattgtattttcaatcaaaccgatcaactgaactgatctaaa 42307128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 1497891 - 1497800
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    |||||||||||  |||||| |||| ||||||| ||||||| |||||| ||| |||||||||| ||| ||||||||||||| |||| ||||||    
T  1497891 gtatgttgtatagatgaaacacaaatttgtgaaaatatgattttttttattgtattttcaaacaaaccgatcaaccgaaccgatccaaaccg 1497800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 20665956 - 20666034
Alignment:
Q  214 aaaccgtactgataaagatttcattggttcgaaca-ttttttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    |||||| |||||| ||||||||||||||||| ||| |||||||||  ||||| | ||||||||||||||||||||||||    
T  20665956 aaaccgaactgatgaagatttcattggttcggacaattttttgaccaaaaaccaatccaaaccgaaccgttacacccct 20666034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 7238985 - 7238930
Alignment:
Q  80 ttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaa 135  Q
    ||||||||||||||||||| ||||| | |||||||||||||||||| |||||||||    
T  7238985 ttgtatgcatgaaatacaaatttgttaaaatatgaattttttaattgtattttcaa 7238930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 7244161 - 7244106
Alignment:
Q  80 ttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaa 135  Q
    ||||||||||||||||||| ||||| | |||||||||||||||||| |||||||||    
T  7244161 ttgtatgcatgaaatacaaatttgttaaaatatgaattttttaattgtattttcaa 7244106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 291
Target Start/End: Original strand, 31896693 - 31896900
Alignment:
Q  100 tttgtgacaatatgaatttttt-aattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagttt-----ggctgggtt 193  Q
    ||||||| ||||||| |||||| |||| |||||| ||| ||| |||||||||||||| ||| |||||| || ||||  ||||||||     || | ||||    
T  31896693 tttgtgagaatatgagtttttttaattatatttttaaacaaaccgatcaaccgaactaatccaaaccgaaccaaaccaattagtttagtttggtttggtt 31896792  T
Q  194 ccttttttgaaaaagagtaaaaaccgtact----------gataaagatttcattggttcgaacattttttgactgaaaactagtccaaaccgaaccgtt 283  Q
     ||||||||||||| ||| ||||||| ||           ||||||| |||||| |||||  ||||||||||||||||||| | |||||||| ||| |||    
T  31896793 tcttttttgaaaaacagtgaaaaccgaaccaatccaaaccgataaaggtttcatcggttcagacattttttgactgaaaaccaatccaaaccaaactgtt 31896892  T
Q  284 acacccct 291  Q
    ||||||||    
T  31896893 acacccct 31896900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 16745864 - 16745743
Alignment:
Q  100 tttgtgacaatatgaatttttt--aattctattttcaaataaatcgatcaaccgaactgatctaaaccgcacaaaactgattagtttggctgggttcctt 197  Q
    ||||||| ||||||||||||||  |||| | |||| ||||||| ||||||||| |||  ||| | |||| || |||| ||||||||||| | |||| |||    
T  16745864 tttgtgagaatatgaattttttttaattgtttttttaaataaaccgatcaaccaaaccaatccagaccgaaccaaaccgattagtttggttcggtttctt 16745765  T
Q  198 ttttgaaaaagagtaaaaaccg 219  Q
     ||||||||| ||| |||||||    
T  16745764 gtttgaaaaacagtgaaaaccg 16745743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 19948232 - 19948286
Alignment:
Q  100 tttgtgacaatatgaatttttt-aattctattttcaaataaatcgatcaaccgaa 153  Q
    ||||||| |||||||||||||| |||| |||||| ||||||||||||||||||||    
T  19948232 tttgtgagaatatgaatttttttaattgtatttttaaataaatcgatcaaccgaa 19948286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 19948391 - 19948433
Alignment:
Q  249 ttttttgactgaaaactagtccaaaccgaaccgttacacccct 291  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  19948391 ttttttgactgaaaaccaatccaaaccgaaccgttacacccct 19948433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 29126680 - 29126765
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt-aattctattttcaaataaatcgatcaaccgaactgatc 159  Q
    ||||||||||| ||| |||| ||| ||||||| ||||| |||||||| |||| |||||||||| ||| ||||||||| || |||||    
T  29126680 gtatgttgtatacatcaaatgcaaatttgtgagaatataaattttttcaattgtattttcaaacaaaccgatcaaccaaattgatc 29126765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 20665817 - 20665896
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaattttttaattctattttcaaataaatcgatcaaccgaac 154  Q
    |||||||||||||||||||||||| ||||||| ||||  ||    |||||| || ||| ||| |||||||||||||||||    
T  20665817 gtatgttgtatgcatgaaatacaaatttgtgaaaataaaaaaaaattaattgtagtttaaaacaaatcgatcaaccgaac 20665896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 6778 - 6870
Alignment:
Q  75 gtatgttgtatgcatgaaatacaactttgtgacaatatgaatttttt-aattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    |||||||||| || ||||||| || ||||||| |||||| ||||||| |||| |||||||||| ||||||||||||||||| |||| ||||||    
T  6778 gtatgttgtacgcgtgaaatataaatttgtgaaaatatggatttttttaattgtattttcaaacaaatcgatcaaccgaaccgatccaaaccg 6870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 344066 - 343984
Alignment:
Q  83 tatgcatgaaatacaactttgtgacaatat-gaattttttaattctattttcaaataaatcgatcaaccgaactgatctaaaccg 166  Q
    ||||||||||| |||| ||||||| ||||| || |||||||||| ||||  |||| |||||||||||||||||||||||||||||    
T  344066 tatgcatgaaaaacaaatttgtgaaaatatagatttttttaattgtatt--caaacaaatcgatcaaccgaactgatctaaaccg 343984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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