View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20008_low_40 (Length: 232)
Name: NF20008_low_40
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 1690408 - 1690203
Alignment:
| Q |
11 |
atcatcaattcaatttggtttccaaggaacaatagcaggtttaacaacatcaaaccaaatatgaactcaacatgttcatcaattgatgattttgttattc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1690408 |
atcatcaattcaatttggtttccaaggaacaatagcaggtttaacaacatcaaaccaaatacgaactcaatatgttcatcaattgatgattttgttattc |
1690309 |
T |
|
| Q |
111 |
taaaagcttttagaattagcaaccatcatccaaaggctcctaggattattgacgtgacatgacatcctccaatccttaatatgattaaatgcaatacata |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1690308 |
taaaagcttttagaattagcaaccatcatccaaaggctcctgggattattgacgtgatatgacatcctccaatccttaatatgattaaatgcaatacata |
1690209 |
T |
|
| Q |
211 |
tggtac |
216 |
Q |
| |
|
|||||| |
|
|
| T |
1690208 |
tggtac |
1690203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University