View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_41 (Length: 218)
Name: NF20008_low_41
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 38560528 - 38560340
Alignment:
| Q |
17 |
aataatatcattgtaaaagaaatatataagtttattctacgaagacagataaactattataagtttatccccatcttcaccc--gattgtggattatgtt |
114 |
Q |
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| T |
38560528 |
aataatattattgtaaaa-aaatatataagtttattctacgaagacagataaactattataagtttatccccatcttctctcctgattgtggattatgtt |
38560430 |
T |
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| Q |
115 |
gtcatgtctaaaggagatagtacgatttagaaattatttttctctttcaagttcaatatctttgccaatgaattatgatttaattttgat |
204 |
Q |
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| T |
38560429 |
gtcatgtctaaaggagatagtacgatttagaaattatttttctctttcaagttcaatatcttagccaataaattatgatttaattttgat |
38560340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 38579486 - 38579301
Alignment:
| Q |
18 |
ataatatcattgtaaaagaaatatataagtttattctacgaagacagataaactattataagtttatccccatcttcacccgattgtggattatgttgtc |
117 |
Q |
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| T |
38579486 |
ataatattattgcaaacgaaatatataaatttattctacgaagactgataaactattataactttatccccatcttcccccgattgtgaattatattgtc |
38579387 |
T |
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| Q |
118 |
atgtctaaaggagatagtacgatttagaaattatttttctctttcaagttcaatatctttgccaatgaattatgatttaattttga |
203 |
Q |
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| T |
38579386 |
aagtctaaaggagataatacaatttaaaaattatttttcgttttcaaattcaatattttagccgatgacttatgatttaattttga |
38579301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 38604155 - 38604097
Alignment:
| Q |
26 |
attgtaaaagaaatatataagtttattctacgaagacagataaactattataagtttatc |
85 |
Q |
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| T |
38604155 |
attgtaaaagaaatatataa-tttattatatgaagactagtaaactattataagtttatc |
38604097 |
T |
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