View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20008_low_45 (Length: 205)

Name: NF20008_low_45
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20008_low_45
NF20008_low_45
[»] chr3 (4 HSPs)
chr3 (19-186)||(28259217-28259384)
chr3 (24-112)||(5747045-5747134)
chr3 (24-112)||(5784004-5784093)
chr3 (24-112)||(7816422-7816511)
[»] chr8 (1 HSPs)
chr8 (20-100)||(32706129-32706210)
[»] chr7 (1 HSPs)
chr7 (23-63)||(32575794-32575834)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 9e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 28259384 - 28259217
Alignment:
Q  19 atacatctcttaaaaacgaaagaattttctcatccgtcgaattttttaaaccaaaacatcctcaatcgaagaagaaggaatgacactacaacacatcctt 118  Q
    |||||||||||||||| ||| ||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28259384 atacatctcttaaaaatgaaggaatttcttcattcgtcgaattttttaaaccaaaacatcctcaatcgaagaagaaggaatgacactacaacacatgctt 28259285  T
Q  119 caaaagagaaacttcatgattaatataatagaacaatatgtactattagtttttaccagtccacatta 186  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||    
T  28259284 caaaagagaaacttcatgattaatataatagaacaatgtgtactattagtttttaccggtgcacatta 28259217  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 5747045 - 5747134
Alignment:
Q  24 tctcttaaaaacgaaagaattttctcatccgtcgaattttt-taaaccaaaacatcctcaatcgaagaagaaggaatgacactacaacac 112  Q
    |||||||||||| || |||||||||||||||||||||||||  |||||| ||||||  || ||| |||||||| ||||||| | ||||||    
T  5747045 tctcttaaaaacaaatgaattttctcatccgtcgaatttttccaaaccataacatctacagtcggagaagaagaaatgacaatgcaacac 5747134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 5784004 - 5784093
Alignment:
Q  24 tctcttaaaaacgaaagaattttctcatccgtcgaattttt-taaaccaaaacatcctcaatcgaagaagaaggaatgacactacaacac 112  Q
    |||||||||||| || |||||||||||||||||||||||||  |||||| ||||||  || ||| |||||||| ||||||| | ||||||    
T  5784004 tctcttaaaaacaaatgaattttctcatccgtcgaatttttccaaaccataacatctacagtcggagaagaagaaatgacaatgcaacac 5784093  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 7816422 - 7816511
Alignment:
Q  24 tctcttaaaaacgaaagaattttctcatccgtcgaatttt-ttaaaccaaaacatcctcaatcgaagaagaaggaatgacactacaacac 112  Q
    |||||||||||| || |||||| |||||||||||||||||   |||||||| |||||||| ||| |||||||| ||||||| | ||||||    
T  7816422 tctcttaaaaacaaaggaatttcctcatccgtcgaattttcccaaaccaaaccatcctcagtcggagaagaagtaatgacaatgcaacac 7816511  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 32706129 - 32706210
Alignment:
Q  20 tacatctcttaaaaacgaaagaattttctcatccgtcgaatttttt-aaaccaaaacatcctcaatcgaagaagaaggaatg 100  Q
    |||||||||||||||| ||  ||||||||||||  || ||||||   |||||| ||||||||||||| || |||||||||||    
T  32706129 tacatctcttaaaaacaaataaattttctcatctttcaaattttgccaaaccataacatcctcaatcaaaaaagaaggaatg 32706210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 32575794 - 32575834
Alignment:
Q  23 atctcttaaaaacgaaagaattttctcatccgtcgaatttt 63  Q
    ||||||| ||||| |||||||||||||||| ||||||||||    
T  32575794 atctcttgaaaacaaaagaattttctcatctgtcgaatttt 32575834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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