View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20008_low_5 (Length: 493)

Name: NF20008_low_5
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20008_low_5
NF20008_low_5
[»] chr1 (9 HSPs)
chr1 (209-474)||(47583846-47584111)
chr1 (1-229)||(47583604-47583832)
chr1 (250-473)||(47574170-47574393)
chr1 (1-196)||(47573911-47574106)
chr1 (250-469)||(47567290-47567504)
chr1 (1-206)||(47567024-47567229)
chr1 (356-474)||(47626901-47627019)
chr1 (314-473)||(47698011-47698170)
chr1 (148-191)||(47592472-47592515)
[»] chr6 (9 HSPs)
chr6 (353-472)||(20236379-20236498)
chr6 (353-472)||(22206507-22206626)
chr6 (272-474)||(22086441-22086643)
chr6 (353-472)||(22130363-22130482)
chr6 (272-474)||(21968548-21968750)
chr6 (353-472)||(18996058-18996177)
chr6 (419-472)||(18979956-18980009)
chr6 (419-472)||(20084252-20084305)
chr6 (353-472)||(24386637-24386757)
[»] scaffold0074 (1 HSPs)
scaffold0074 (353-472)||(49282-49401)
[»] scaffold0007 (1 HSPs)
scaffold0007 (353-472)||(6828-6947)
[»] chr8 (1 HSPs)
chr8 (356-472)||(10401925-10402041)
[»] chr5 (1 HSPs)
chr5 (353-473)||(470366-470486)
[»] chr3 (1 HSPs)
chr3 (353-399)||(36067430-36067476)
[»] chr4 (1 HSPs)
chr4 (328-384)||(36370099-36370155)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 209 - 474
Target Start/End: Original strand, 47583846 - 47584111
Alignment:
Q  209 ctagattaaacaataatctagtccataatgacnnnnnnnattgttattcagggagttcttttggatggacaagaagttgctgtgaagaggcttacaagaa 308  Q
    |||||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47583846 ctagattaaacaataatctagtccataacgactttttttattgttattcagggagttcttttggatggacaagaagttgctgtgaagaggcttacaagaa 47583945  T
Q  309 gctctggacaaggtgcagtagagtttaaaaatgaggttcaagttatagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaaga 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47583946 gctctggacaaggtgcagtagagtttaaaaatgaggttcaagttatagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaaga 47584045  T
Q  409 tgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggtat 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584046 tgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggtat 47584111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 47583604 - 47583832
Alignment:
Q  1 atttgcatataaaaagaggcatttcttttagccatataacttatagaattcaaacgtgttgttgtagttggaaatgatgttaccactttggaatcgttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47583604 atttgcatataaaaagaggcatttcttttagccatataacttatagaattcaaacgtgttgttgtagttggaaatgatgttaccactttggaatcgttac 47583703  T
Q  101 aatttgaatttgccaaaattgaagcagcaacaaacagatttgctgcagaaaacaggataggcaaaggtggatttggagaagtctacaaggtaaataaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47583704 aatttgaatttgccaaaattgaagcagcaacaaacagatttgctgcagaaaacaggataggcaaaggtggatttggagaagtctacaaggtaaataaatc 47583803  T
Q  201 aactaggactagattaaacaataatctag 229  Q
    ||| |||||||||||||||||||||||||    
T  47583804 aacaaggactagattaaacaataatctag 47583832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 250 - 473
Target Start/End: Original strand, 47574170 - 47574393
Alignment:
Q  250 tgttattcagggagttcttttggatggacaagaagttgctgtgaagaggcttacaagaagctctggacaaggtgcagtagagtttaaaaatgaggttcaa 349  Q
    |||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||     
T  47574170 tgttgttcagggaattcttttggatggacaagaaattgcggtgaagaggcttacaagtagctccgggcaaggtgcagtagagtttaaaaatgaggttcat 47574269  T
Q  350 gttatagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaa 449  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| ||||| |    
T  47574270 gttatagccaagcttcaacacagaaatctagtaagattactaggattttgtttggaagatgaggagaagatactaatctttgagtatgtgccaaacaaga 47574369  T
Q  450 gtcttgattactttctatttggta 473  Q
    |||||||||||||| |||||||||    
T  47574370 gtcttgattactttttatttggta 47574393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 47573911 - 47574106
Alignment:
Q  1 atttgcatataaaaagaggcatttcttttagccatataacttatagaattcaaacgtgttgttgtagttggaaatgatgttaccactttggaatcgttac 100  Q
    ||||||| | ||||||| ||||||| |||| ||||||||||||||||||| |||| ||||  ||||||||| |||||  ||| | |||||||||| || |    
T  47573911 atttgcaaacaaaaagatgcatttcctttaaccatataacttatagaattaaaacttgtttctgtagttgggaatgacattaactctttggaatccttgc 47574010  T
Q  101 aatttgaatttgccaaaattgaagcagcaacaaacagatttgctgcagaaaacaggataggcaaaggtggatttggagaagtctacaaggtaaata 196  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47574011 aatttgaatttgccgaaattgaagcagcaacaaacagatttgctgcagataacaggataggcaaaggtggatttggagaagtctacaaggtaaata 47574106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 250 - 469
Target Start/End: Original strand, 47567290 - 47567504
Alignment:
Q  250 tgttattcagggagttcttttggatggacaagaagttgctgtgaagaggcttacaagaagctctggacaaggtgcagtagagtttaaaaatgaggttcaa 349  Q
    |||| |||||||| |||||||||||||||||||| |||||| |||||| ||||| | |||||| || |||||||||  |||||| |||||||||||||      
T  47567290 tgttgttcagggaattcttttggatggacaagaaattgctgcgaagagacttacgaaaagctccgg-caaggtgcaacagagtt-aaaaatgaggttctt 47567387  T
Q  350 gttatagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaa 449  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||   ||||||||||||||||||||||||||||| ||||| |    
T  47567388 gttatagccaagcttcaacatagacatctagtgagattactaggatattatttggaagat---gagaagatacttatctatgagtatgtgccaaacaaga 47567484  T
Q  450 gtcttgattactttctattt 469  Q
    |||||||||||||| |||||    
T  47567485 gtcttgattactttttattt 47567504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 47567024 - 47567229
Alignment:
Q  1 atttgcatataaaaagaggcatttcttttagccatataacttatagaattcaaacgtgttgttgtagttggaaatgatgttaccactttggaatcgttac 100  Q
    ||||||| | |||| || ||||||| |||| |||| ||||||||||||||||||  ||||||||||||||| ||||||   ||| ||||||| || || |    
T  47567024 atttgcaaacaaaaggaagcatttcctttaaccatgtaacttatagaattcaaaattgttgttgtagttgggaatgatacgacctctttggagtccttgc 47567123  T
Q  101 aatttgaatttgccaaaattgaagcagcaacaaacagatttgctgcagaaaacaggataggcaaaggtggatttggagaagtctacaaggtaaataaatc 200  Q
    |||||||| | ||||| ||  |||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||    
T  47567124 aatttgaactagccaatatccaagcagcaacaaacagatttactgcagaaaataggaaaggcaaaggtggatttggagaagtctacaaggtaaatatatc 47567223  T
Q  201 aactag 206  Q
    ||||||    
T  47567224 aactag 47567229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 474
Target Start/End: Original strand, 47626901 - 47627019
Alignment:
Q  356 gccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttg 455  Q
    ||||| ||||||||||||||| ||||||| ||| ||||||||||  | |||||  |||| ||||||||  ||||||| |||||||| |||||||||||||    
T  47626901 gccaaacttcaacacagaaatttagtgaggttaataggattttgccttgaagaccaagaaaagatactcgtctatgaatatgtgcctaacaaaagtcttg 47627000  T
Q  456 attactttctatttggtat 474  Q
    || |||| |||||||||||    
T  47627001 atcacttcctatttggtat 47627019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 473
Target Start/End: Original strand, 47698011 - 47698170
Alignment:
Q  314 ggacaaggtgcagtagagtttaaaaatgaggttcaagttatagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaag 413  Q
    ||||||||| |||||||||| ||||||||||||  ||  |||||||| |||||||| |||||| | ||||  ||| |||| ||||| |||||||   |||    
T  47698011 ggacaaggttcagtagagttcaaaaatgaggttttagagatagccaaacttcaacatagaaatttggtgactttaataggtttttgcttggaaggccaag 47698110  T
Q  414 agaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggta 473  Q
    |||| || || || ||||| |||||| | ||||| ||||| |||||||||||||||||||    
T  47698111 agaaaatgctcatttatgaatatgtgaccaacaagagtctcgattactttctatttggta 47698170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 47592472 - 47592515
Alignment:
Q  148 gaaaacaggataggcaaaggtggatttggagaagtctacaaggt 191  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||||    
T  47592472 gaaaacaagattggcaaaggtggatttggagaagtttacaaggt 47592515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 353 - 472
Target Start/End: Complemental strand, 20236498 - 20236379
Alignment:
Q  353 atagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtc 452  Q
    ||||||||||||||||| ||||||||||||  |||  | ||||||||  | |||||  ||||||| |||||||| ||||| | |||||| ||||| ||||    
T  20236498 atagccaagcttcaacatagaaatctagtggcatttattggattttgccttgaagaacaagagaaaatacttatttatgaatttgtgcccaacaagagtc 20236399  T
Q  453 ttgattactttctatttggt 472  Q
    ||||||||||||||||||||    
T  20236398 ttgattactttctatttggt 20236379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 353 - 472
Target Start/End: Original strand, 22206507 - 22206626
Alignment:
Q  353 atagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtc 452  Q
    ||||||||||||||||| ||||||||||||  |||  | ||||||||  | |||||  ||||||| |||||||| ||||| | |||||| ||||| ||||    
T  22206507 atagccaagcttcaacatagaaatctagtggcatttattggattttgccttgaagaacaagagaaaatacttatttatgaatttgtgcccaacaagagtc 22206606  T
Q  453 ttgattactttctatttggt 472  Q
    ||||||||||||||||||||    
T  22206607 ttgattactttctatttggt 22206626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 474
Target Start/End: Complemental strand, 22086643 - 22086441
Alignment:
Q  272 gatggacaagaagttgctgtgaagaggcttacaagaagctctggacaaggtgcagtagagtttaaaaatgaggttcaagttatagccaagcttcaacaca 371  Q
    ||||||| |||||| ||| | ||||||||| ||||||| |||   ||||||| ||  ||||| || |||||  ||  | | |||||||||||||||||||    
T  22086643 gatggacgagaagtagctataaagaggctttcaagaagttctaagcaaggtgtagaggagttcaagaatgaaattttattgatagccaagcttcaacaca 22086544  T
Q  372 gaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttgg 471  Q
    |||||||||| | |||  | || |||||  | ||||   | |||||||||||||| ||||| |||||  | ||||||||||||||||||||| |||||||    
T  22086543 gaaatctagtcacatttattggtttttgccttgaaggacatgagaagatacttatttatgaatatgtttccaacaaaagtcttgattactttttatttgg 22086444  T
Q  472 tat 474  Q
    |||    
T  22086443 tat 22086441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 353 - 472
Target Start/End: Complemental strand, 22130482 - 22130363
Alignment:
Q  353 atagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtc 452  Q
    ||||||||||||||||| ||||||||||||   ||  | || |||||  | |||||  ||||||| |||||||| ||||| | |||||| ||||| ||||    
T  22130482 atagccaagcttcaacatagaaatctagtggctttttttggtttttgccttgaagaacaagagaaaatacttatttatgaatttgtgcccaacaagagtc 22130383  T
Q  453 ttgattactttctatttggt 472  Q
    ||||||||||||||||||||    
T  22130382 ttgattactttctatttggt 22130363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 474
Target Start/End: Complemental strand, 21968750 - 21968548
Alignment:
Q  272 gatggacaagaagttgctgtgaagaggcttacaagaagctctggacaaggtgcagtagagtttaaaaatgaggttcaagttatagccaagcttcaacaca 371  Q
    ||||||| |||||| ||| | ||||||||| ||||||| |||   ||||||| ||  ||||| || |||||  ||  | | ||||||||||||||||| |    
T  21968750 gatggacgagaagtagctataaagaggctttcaagaagttctaagcaaggtgtagaggagttcaagaatgaaattttattgatagccaagcttcaacata 21968651  T
Q  372 gaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttgg 471  Q
    ||||||||||||  ||  | || |||||| | ||||   | |||||||||||||| ||||| |||||  | ||||| ||||||||||||||| |||||||    
T  21968650 gaaatctagtgacttttattggcttttgtcttgaaggacatgagaagatacttatttatgaatatgtttccaacaagagtcttgattactttttatttgg 21968551  T
Q  472 tat 474  Q
    |||    
T  21968550 tat 21968548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 472
Target Start/End: Complemental strand, 18996177 - 18996058
Alignment:
Q  353 atagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtc 452  Q
    ||||||||||||||||| ||||||||||||  |||  | || |||||  | |||||  ||||||| |||||||| ||||| | |||||| ||| | ||||    
T  18996177 atagccaagcttcaacatagaaatctagtggcatttattggtttttgccttgaagaacaagagaaaatacttatttatgaatttgtgcccaactatagtc 18996078  T
Q  453 ttgattactttctatttggt 472  Q
    |||||| |||||||||||||    
T  18996077 ttgatttctttctatttggt 18996058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 18980009 - 18979956
Alignment:
Q  419 atacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggt 472  Q
    |||||||| ||||| |||||||| |||||||||||||||| |||||||||||||    
T  18980009 atacttatttatgaatatgtgccaaacaaaagtcttgatttctttctatttggt 18979956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 20084305 - 20084252
Alignment:
Q  419 atacttatctatgagtatgtgccgaacaaaagtcttgattactttctatttggt 472  Q
    |||||||| ||||| |||||||| |||||||||||||||| |||||||||||||    
T  20084305 atacttatttatgaatatgtgccaaacaaaagtcttgatttctttctatttggt 20084252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 472
Target Start/End: Original strand, 24386637 - 24386757
Alignment:
Q  353 atagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatct-atgagtatgtgccgaacaaaagt 451  Q
    ||||||||||||||||| |||||||||||    ||  | || |||||  | |||||  ||||||| |||||||| | || | |||||||| |||||||||    
T  24386637 atagccaagcttcaacatagaaatctagttgcttttattggtttttgccttgaagaacaagagaaaatacttattttataaatatgtgccaaacaaaagt 24386736  T
Q  452 cttgattactttctatttggt 472  Q
    ||||||| |||||||||||||    
T  24386737 cttgatttctttctatttggt 24386757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 472
Target Start/End: Original strand, 49282 - 49401
Alignment:
Q  353 atagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtc 452  Q
    ||||||||||||||||| ||||||||||||  |||  | || |||||  | |||||  ||||||| |||||||| ||||| | |||||| ||||||||||    
T  49282 atagccaagcttcaacatagaaatctagtggcatttattggtttttgccttgaagaacaagagaaaatacttatttatgaatttgtgcccaacaaaagtc 49381  T
Q  453 ttgattactttctatttggt 472  Q
    |||||| |||||||||||||    
T  49382 ttgatttctttctatttggt 49401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 472
Target Start/End: Original strand, 6828 - 6947
Alignment:
Q  353 atagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtc 452  Q
    ||||||||||||||||| ||||||||||||  |||  | || |||||  | |||||  ||||||| |||||||| ||||| | |||||| ||||||||||    
T  6828 atagccaagcttcaacatagaaatctagtggcatttattggtttttgccttgaagaacaagagaaaatacttatttatgaatttgtgcccaacaaaagtc 6927  T
Q  453 ttgattactttctatttggt 472  Q
    |||||| |||||||||||||    
T  6928 ttgatttctttctatttggt 6947  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 472
Target Start/End: Complemental strand, 10402041 - 10401925
Alignment:
Q  356 gccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttg 455  Q
    |||||||||||||| ||||||||||| | |||  | || |||||  | ||||| || ||||| |||||||| ||||| |||||||||||||| |||||||    
T  10402041 gccaagcttcaacatagaaatctagtcacattcatcggcttttgccttgaagaagaggagaaaatacttatatatgaatatgtgccgaacaagagtcttg 10401942  T
Q  456 attactttctatttggt 472  Q
    || ||||| ||||||||    
T  10401941 atcactttttatttggt 10401925  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 473
Target Start/End: Complemental strand, 470486 - 470366
Alignment:
Q  353 atagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtc 452  Q
    ||||||||||||||||| |||||| | ||||  ||||||||||| || ||||||||   ||| || || ||||| ||||| |||||||| || || ||||    
T  470486 atagccaagcttcaacatagaaatttggtgactttactaggattctgcttggaagaacgagaaaaaatgcttatatatgaatatgtgcctaataagagtc 470387  T
Q  453 ttgattactttctatttggta 473  Q
    ||||||| || ||||||||||    
T  470386 ttgattatttcctatttggta 470366  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 36067476 - 36067430
Alignment:
Q  353 atagccaagcttcaacacagaaatctagtgagattactaggattttg 399  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||    
T  36067476 atagccaagcttcaacacagaaatcttgtgagattgttaggattttg 36067430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 36370099 - 36370155
Alignment:
Q  328 agagtttaaaaatgaggttcaagttatagccaagcttcaacacagaaatctagtgag 384  Q
    ||||||||||||||| ||| || || ||| ||| |||||||||||||||||||||||    
T  36370099 agagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaaatctagtgag 36370155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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