View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20008_low_9 (Length: 462)
Name: NF20008_low_9
Description: NF20008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20008_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 86 - 448
Target Start/End: Original strand, 35808005 - 35808367
Alignment:
| Q |
86 |
ggatgataagcagaaaatgttatcaataaactgcttatctaataatatggtcctggtccagaagcagaatttcatgatttacatatgtaaggttttttaa |
185 |
Q |
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| T |
35808005 |
ggatgataagcagaaaatgttatcaataaactgcttatctaataatatggtcctggtccagaagcagaatttcatgatttacatatgtaaggttttttaa |
35808104 |
T |
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| Q |
186 |
tttgcgttgcgtcgcgatctttgatataacaaagaatcactgtcaaaattgactgatgcaattccaatcacggttgcgttgcaattgcagagacataaac |
285 |
Q |
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| T |
35808105 |
tttgcgttgcgtcgcgatctttgatataacaaagaatcactgtcaaaattgactgatgcaattccaatcacggttgcgttgcaattgcagagacataaac |
35808204 |
T |
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| Q |
286 |
tctgcatatatggtacaaaagtgaaactaaataggccaagaaaataatcatattttctagcagtttctataataactcaggaatcataaattggaaaacc |
385 |
Q |
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| T |
35808205 |
tctgcatatatggtacaaaagtgaaactaaataggccaagaaaataatcatattttctagcagtttctataataactcaggaatcataaattggaaaacc |
35808304 |
T |
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| Q |
386 |
aaatcattcatgtagttcttatttattagcatatacaacagaagcactccttttgattaatca |
448 |
Q |
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| T |
35808305 |
aaatcattcatgtagttcttatttattagcatatacaacagaagcactccttttgattaatca |
35808367 |
T |
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