View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20009_high_11 (Length: 320)

Name: NF20009_high_11
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20009_high_11
NF20009_high_11
[»] chr3 (1 HSPs)
chr3 (19-308)||(54029634-54029927)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 54029634 - 54029927
Alignment:
Q  19 atgtgggtgtctcgccatggacgaggtgaagatcttcttgcagacctttaattgtatgtaactcagatgacctgcttctctcatcatggtgtcgagttgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  54029634 atgtgggtgtctcgccatggacgaggtgaagatcttcttgcagatctttaattgtatgtaactcagctgacctgcttctctcatcattgtgtcgagttgg 54029733  T
Q  119 acgacggcgactcaaggtgctgtgcagcgatgcaacttttgggatagaaaaaactttcaaggagagacaaggtggaaataaaactgaaaattaaaataga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54029734 acgacggcgactcaaggtgctgtgcagcgatgcaacttttgggatagaaaaaacgttcaaggagagacaaggtggaaataaaactgaaaattaaaataga 54029833  T
Q  219 aggtgagatggttgagattggattgaa----tgaatgcaggattccattgaccgccgatcccatacatatccgtcaatgatgcattatcatatt 308  Q
    |||||| ||||||||||||||||||||    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54029834 aggtgaaatggttgagattggattgaatgtgtgaatgcaggattccattgaccgctgatcccatacatatccgtcaatgatgcattatcatatt 54029927  T

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