View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20009_high_17 (Length: 252)

Name: NF20009_high_17
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20009_high_17
NF20009_high_17
[»] chr7 (5 HSPs)
chr7 (1-233)||(33399185-33399417)
chr7 (1-140)||(33395394-33395533)
chr7 (10-61)||(33395566-33395617)
chr7 (10-61)||(33399549-33399600)
chr7 (11-61)||(33399450-33399500)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 33399417 - 33399185
Alignment:
Q  1 gtctcctgtaccctcacctacaccggcccctcaagcagcaccgccttcaaatgcaccatggaccgctccccgacggtccctgctgcaaaagaagctattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  33399417 gtctcctgtaccctcacctacaccggcccctcaagcagcaccaccttcaaatgcaccatggaccgctccccgccggtccctgctgcaaaagtagctattc 33399318  T
Q  101 aaaacgattcacaggaatctgataactgtttgagattggattagttcatgtgtcatgtttcaaagtggggctattttttctagtgactaaaatcattaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33399317 aaaacgattcacaggaatctgataactgtttgagattggattagttcatgtgtcatgtttcaaagtggggctattttttctagttactaaaatcattaat 33399218  T
Q  201 tatttattttctttatgttggtgaatttattta 233  Q
    |||||||||||||||||||||||||||||||||    
T  33399217 tatttattttctttatgttggtgaatttattta 33399185  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 33395533 - 33395394
Alignment:
Q  1 gtctcctgtaccctcacctacaccggcccctcaagcagcaccgccttcaaatgcaccatggaccgctccccgacggtccctgctgcaaaagaagctattc 100  Q
    |||||| || ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||    
T  33395533 gtctccggtgccctcacctacaccgtcccctgaagtagcaccgccttcaaatgcaccatggaccgctgcccgccggtccctactgccaaagaagctattc 33395434  T
Q  101 aaaacgattcacaggaatctgataactgtttgagattgga 140  Q
    |||| ||||||||| ||| ||||| |||||||||||||||    
T  33395433 aaaatgattcacagaaatttgatagctgtttgagattgga 33395394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 33395617 - 33395566
Alignment:
Q  10 accctcacctacaccggcccctcaagcagcaccgccttcaaatgcaccatgg 61  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||||||    
T  33395617 accctcacctacaccggcccatgaagcagcaccgtcttcaaatgcaccatgg 33395566  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 33399600 - 33399549
Alignment:
Q  10 accctcacctacaccggcccctcaagcagcaccgccttcaaatgcaccatgg 61  Q
    ||||||||||   ||||||||| |||||||||||||||||||||||||||||    
T  33399600 accctcacctgtgccggcccctgaagcagcaccgccttcaaatgcaccatgg 33399549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 33399500 - 33399450
Alignment:
Q  11 ccctcacctacaccggcccctcaagcagcaccgccttcaaatgcaccatgg 61  Q
    |||||||||||||| |||||| |||| ||||| ||||||||||||||||||    
T  33399500 ccctcacctacaccagcccctgaagccgcacctccttcaaatgcaccatgg 33399450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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