View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20009_high_2 (Length: 611)
Name: NF20009_high_2
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20009_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 19 - 601
Target Start/End: Original strand, 54347613 - 54348196
Alignment:
| Q |
19 |
atatatcattatcaaactcaacatttttctatttctctgatagagtgttttctattaattgatcagtctctttgtgcagtacgtacgtacttccattgct |
118 |
Q |
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| T |
54347613 |
atatatcaatatcaaactcaacatttttctatttctctgatag--tgttttctattaattgatcagtctctttgtgcagtacgtac----ttccattgct |
54347706 |
T |
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| Q |
119 |
atattaattcaatctgattgtgttata---ctacttaagaattatggctgaggagaaaacaccagttcagctgaagtctcttgaggattttgattctcaa |
215 |
Q |
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| T |
54347707 |
atattaattcaatctgattgtgttatataactacttaagaattatggctgaggagaaaacaccagttcagctgaagtctcttgaggattttgattctcaa |
54347806 |
T |
|
| Q |
216 |
aagaaacccgaatcgaacaagtttgctttcgcctgtgctatattggcttccatgacttccattttacttggttatggtaagtagtgacta----tataat |
311 |
Q |
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| T |
54347807 |
aagaaacccgaatcgaacaagtttgctttcgcctgtgctatattggcttccatgacttccattttacttggttatggtaagtagtgactacatatataat |
54347906 |
T |
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| Q |
312 |
gtatatatttacctccatacatattgatacatagctagatagtaaacatgcatggaaatgtatggacattaactaactatatgtatgttattttatgtta |
411 |
Q |
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| T |
54347907 |
gtatatatttacctccatacatattgatacatagctagatagtaaacatgcatggaaatgtatggacattaactaactatatgtatgttattttatgtta |
54348006 |
T |
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| Q |
412 |
tgcagatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaactatctaatgtccaaattgaaatcctagtaggcatcatcaacctt |
511 |
Q |
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| T |
54348007 |
tgcagatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaactatctaatgtccaaattgaaatcctagtaggcatcatcaacctt |
54348106 |
T |
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| Q |
512 |
ttctccttaataggttcctgcctcgctggccgaacctctgactggattggtcgccgttacaccatcgtccttgccggctccatcttcttc |
601 |
Q |
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| T |
54348107 |
ttctccttaataggttcctgcctcgccggccgaacctctgactggattggtcgccgttacaccatcgtccttgctggctccatcttcttc |
54348196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 26152414 - 26152478
Alignment:
| Q |
231 |
aacaagtttgctttcgcctgtgctatattggcttccatgacttccattttacttggttatggtaa |
295 |
Q |
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| T |
26152414 |
aacaagtatgcttttgcttgtgctatgttggcttccatgacttccattttgcttggatatggtaa |
26152478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 26152277 - 26152338
Alignment:
| Q |
234 |
aagtttgctttcgcctgtgctatattggcttccatgacttccattttacttggttatggtaa |
295 |
Q |
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| T |
26152277 |
aagtatgcttttgcttgtgctatgttggcttccatgacttccattttgcttggatatggtaa |
26152338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 298
Target Start/End: Original strand, 27318348 - 27318460
Alignment:
| Q |
186 |
ctgaagtctcttgaggattttgattctcaaaagaaacccgaatcgaacaagtttgctttcgcctgtgctatattggcttccatgacttccattttacttg |
285 |
Q |
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||||| |||||||| ||||||| | ||||||| || | | || |||||||||||||| || |||||||| |||||||| |||||||| || |||||| |
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| T |
27318348 |
ctgaaatctcttgaagattttggtcctcaaaaaaagctcaaaaggaacaagtttgcttgtgcttgtgctatcttggcttctatgacttctatcctacttg |
27318447 |
T |
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| Q |
286 |
gttatggtaagta |
298 |
Q |
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| T |
27318448 |
gatatggtaagta |
27318460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 471
Target Start/End: Original strand, 26152712 - 26152768
Alignment:
| Q |
415 |
agatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaactatc |
471 |
Q |
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| T |
26152712 |
agatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatc |
26152768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 462
Target Start/End: Original strand, 27318767 - 27318815
Alignment:
| Q |
414 |
cagatattggggtgatgagtggagcagtgatatacataaaaagagacct |
462 |
Q |
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| T |
27318767 |
cagatattggtgtgatgagtggagcagccatctatataaaaagagacct |
27318815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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