View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20009_high_4 (Length: 566)
Name: NF20009_high_4
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20009_high_4 |
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| [»] chr7 (4 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 8 - 566
Target Start/End: Original strand, 47072492 - 47073050
Alignment:
| Q |
8 |
agagaagaaaggttggctgtctctaattgtaatatctatagaatagtggatggatgagagaactgggaaacaagtggtttgatatctctacttctcatga |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072492 |
agagaagaacggttggctgtctctaattgtaatatctatagaatagtggatggatgagggaactgggaaacaagtggtttgatatctctacttctcatga |
47072591 |
T |
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| Q |
108 |
aagtcaaaaattgattaggtagttcctccaaaagagcttgcacaacagagatttgtccacctgtcaaaaacacaataatggggttcaattaaatgaataa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072592 |
aagtcaaaaattgattaggtagttcctccaaaagagcttgcacaacagagatttgtccacctgtcaaaaacacaataatggggttcaattaaatgaataa |
47072691 |
T |
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| Q |
208 |
aaattgttagcaaaaatataagagtaataaatattatatttgtccacctgctaacttaatggtacatggattggtgtcaataaaacaaaagacacaatag |
307 |
Q |
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| T |
47072692 |
aaattgttagcaaaaatataagagtaataaatattatatttgtccacctgctaacttaatggtacatggattggtgtcaataaaacaaaagacacaatag |
47072791 |
T |
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| Q |
308 |
ttataagaattgaaagactattacacaagttaactagagaagcaactagtacttactttgtatttctctcatggggacaaactgcactatatctcgtgta |
407 |
Q |
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| T |
47072792 |
ttataagaattgaaagactattacacaagttaactagagaagcaactagtacttactttgtatttctctcatggggacaaactgcactatatctcgtgta |
47072891 |
T |
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| Q |
408 |
gctattcgaccggtagaactttctaagcgacatccattatcagcatccagtacctgtaataattaaccttagtacttgttattctctcagataaaaaagc |
507 |
Q |
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| T |
47072892 |
gctattcgaccggtagaactttctaagcgacatccattatcagcatccagtacctgtaataattaaccttagtacttgttattctctcagataaaaaagc |
47072991 |
T |
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| Q |
508 |
atacttagcaggagccatgttaaggaaaagaaacttaggcaaggatataagtagacctc |
566 |
Q |
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| T |
47072992 |
atacttagcaggagccatgttaaggaaaagaaacttaggcaaggatataagtaaacctc |
47073050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 354 - 473
Target Start/End: Original strand, 47054826 - 47054945
Alignment:
| Q |
354 |
tagtacttactttgtatttctctcatggggacaaactgcactatatctcgtgtagctattcgaccggtagaactttctaagcgacatccattatcagcat |
453 |
Q |
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| T |
47054826 |
tagtacttactttgtacttctctcatggggacaaattgtactatatctcgtgcagctacacgaccaatagaactttttaagcgaggtccattatcagtat |
47054925 |
T |
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| Q |
454 |
ccagtacctgtaataattaa |
473 |
Q |
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| T |
47054926 |
ccagtacctgaaataattaa |
47054945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 47054492 - 47054599
Alignment:
| Q |
79 |
aagtggtttgatatctctacttctcatgaaagtcaaaaattgattaggtagttcctccaaaagagcttgcacaacagagatttgtccacctgtcaaaaac |
178 |
Q |
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|||||||||||||| |||||||| |||||||| |||||| |||| ||||| ||| |||||||||||||||||||||||||| ||||| ||| ||||||| |
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| T |
47054492 |
aagtggtttgatatttctacttcgcatgaaagacaaaaactgatcaggtaattcttccaaaagagcttgcacaacagagatctgtccttctg-caaaaac |
47054590 |
T |
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| Q |
179 |
acaataatg |
187 |
Q |
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|||| |||| |
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| T |
47054591 |
acaagaatg |
47054599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 33598568 - 33598601
Alignment:
| Q |
8 |
agagaagaaaggttggctgtctctaattgtaata |
41 |
Q |
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| T |
33598568 |
agagaagaaaggttggctgtctctaattgtaata |
33598601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 8e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 260 - 566
Target Start/End: Complemental strand, 18232372 - 18232067
Alignment:
| Q |
260 |
aacttaatggtacatggattggtgtcaataaaacaaaagacacaatagttataagaattgaaagactattacacaagttaa-ctagagaagcaactagta |
358 |
Q |
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||||| |||||||||| ||| |||||||||||||||| ||| ||| ||||||||||||||||| |||| || |||||| || |||||||||| ||||||| |
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| T |
18232372 |
aacttgatggtacatgaatttgtgtcaataaaacaaa-gactcaaaagttataagaattgaaaaactacta-acaagtcaaactagagaagcgactagta |
18232275 |
T |
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| Q |
359 |
cttactttgtatttctctcatggggacaaactgcactatatctcgtgtagctattcgaccggtagaactttctaagcgacatccattatcagcatccagt |
458 |
Q |
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| T |
18232274 |
cttactttgtacttctctcatggggacaaattgcactatatctcgtgtagctagacgaccagtagaacttttcaatcgacgaccattatcagcatccagt |
18232175 |
T |
|
| Q |
459 |
acctgtaataattaaccttagtacttgttattctctcagataaaaaagcatacttagcaggagccatgttaaggaaaagaaacttaggcaaggatataag |
558 |
Q |
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| T |
18232174 |
acctgtaatgataaaccttagtacatgttattctctcagataacaaagcatacttcgtgggagtcgtgctaaggaaaagaaacatagggaacgataaaag |
18232075 |
T |
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| Q |
559 |
tagacctc |
566 |
Q |
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||||||| |
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| T |
18232074 |
cagacctc |
18232067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 18232655 - 18232465
Alignment:
| Q |
29 |
tctaattgtaatatctatagaatagtggatggatgagagaactgggaaacaagtggtttgatatctctacttctcatgaaagtcaaaaattgattaggta |
128 |
Q |
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||||||||||| |||||| |||||| | || ||||| ||| || ||||| ||||||||||||||||||||||||||||||| || ||||||| |||||| |
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| T |
18232655 |
tctaattgtaaaatctattgaatagagcgtgcatgagggaaatgcgaaacgagtggtttgatatctctacttctcatgaaagccagaaattgactaggta |
18232556 |
T |
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| Q |
129 |
gttcctccaaaagagcttgcacaacagagatttgtccacctgtcaaaaacacaataatggggttcaattaaatgaataaaaattgttagca |
219 |
Q |
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| T |
18232555 |
gttcctctaaaagagcttgcacaacagagatttgtccacctgccaaaaatacaataatggggttcaattaaatgagtaaagattgttagca |
18232465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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