View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20009_low_10 (Length: 401)
Name: NF20009_low_10
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20009_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 219 - 391
Target Start/End: Complemental strand, 45070245 - 45070074
Alignment:
| Q |
219 |
aactagtcatttaatttgctatattcgcctatgaatataatgaatgtggtgattgaaataaagtaggattcatgattgcattgtcttttaacaagggagg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45070245 |
aactagtcatttaatttgctatattcgcctatgaatata-tgaatgtggtgattgaaataaagtaggattcatgattgcattgtcttttaacaagggagg |
45070147 |
T |
|
| Q |
319 |
ccattagtgtacataaggacacaacatcctatcataaataactaaaatcttagcaataacggtcgttgatgat |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45070146 |
ccattagtgtacataaggacacaacatcctatcataaataactaaaatcttagcaataacggtcgttgatgat |
45070074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 45070469 - 45070273
Alignment:
| Q |
1 |
ttgtttgtatctttcttttcacttgatatatatgtataccatcttggaagtatgcacaaaagactctaagtggtctcaagggtgtgaaataattgacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45070469 |
ttgtttgtatctttcttttcacttgatatatatgtataccatcttggaagtatgcacaaaagactctaagtggtctcaagggtgtgaaataattgacatt |
45070370 |
T |
|
| Q |
101 |
acctaaccacagtaggaattaatattgtggttagcc-----tgatattgacacgtgg-nnnnnnntgtttatagacgtcgtttcttatgttatggca |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45070369 |
acctaaccacagtaggaattaatattgtggttagccaaacatgatattgacacgtggaaaaaaaatgtttatagacgtcgtttcttatgttatggca |
45070273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University