View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20009_low_11 (Length: 357)
Name: NF20009_low_11
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20009_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 47352345 - 47352701
Alignment:
| Q |
1 |
ttttcagcatttaatggctagggttgctatatgatatggctaacgattttcctccaaaaccagtatcttgtatgttaatttctaggacctctacatcaag |
100 |
Q |
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| T |
47352345 |
ttttcagcatttaatggctagggtttctatatgatatggctaacgattttcctccaaaaccagtatcatgtatgttaatttctaggacctctacatcaag |
47352444 |
T |
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| Q |
101 |
gtaaaatctatggttgaccacagtattagttgatctacagaaatcattatttctagactgttggtttaattgagctaactaattttattatgcatcaacc |
200 |
Q |
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| T |
47352445 |
gcaaaatctatggttgaccacagtattagttggtctacagaaatcattatttctagactgttggtttaattgagctaacaaattttattatgcatcaacc |
47352544 |
T |
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| Q |
201 |
tcaccaaattgcctttctctctcctctatcccactctctaccgtctcttcccctgccctttgatcatcagaaaatatccatcctccacctaaaaccttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47352545 |
tcaccaaattgcctttctctctcctctatcccactctctaccgtctcttcccctcccctttgatcatcagaaaatatccatcctccacctaaaaccttaa |
47352644 |
T |
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| Q |
301 |
ccttttgaaacaaacaaataacaacttatttttctttgatgtactcacttctctaat |
357 |
Q |
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| T |
47352645 |
ccttttgaaacaaacaaataacaacttatttttctttgatgaactcacttcactaat |
47352701 |
T |
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