View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20009_low_13 (Length: 343)
Name: NF20009_low_13
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20009_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 85 - 330
Target Start/End: Original strand, 37863604 - 37863847
Alignment:
| Q |
85 |
ctgaatcaactttgttgttgttgctcggtgtgggtgtgggtgaagaaagaataagactgattacaattttcagaatttactcgctattgttgtgagnnnn |
184 |
Q |
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| T |
37863604 |
ctgaatcaactttgttgttgttgctcggtg--ggtgtgggtgaagaaagaataagactaattacaattttcagaatttactcgctattgttgtgagtttt |
37863701 |
T |
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| Q |
185 |
nnnnnaataataatttatgttgacgttgtgatacttgcaaggtgcaacaactctgaagcgaaactccatgtcacaaacgatggaaaatggaaatagggaa |
284 |
Q |
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| T |
37863702 |
tttttaataataatttatgttgacgttgtgattcttgcaaggtgcaacaactctgaagcgaaactccatgtcacaaacgatggaaaatggaaatagggaa |
37863801 |
T |
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| Q |
285 |
gaaaagaaattaacagaataataattgtgttaagggatgtgtttgt |
330 |
Q |
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| T |
37863802 |
gaaaagaaattaacagaataataatggtgttaagggatgtgtttgt |
37863847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 37863491 - 37863573
Alignment:
| Q |
3 |
tagagggaacaaggagaaaaaggacaaaaatggattagtgattctattttgatttatgcacgggttgctttgtctgctgctgc |
85 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37863491 |
tagagggaacaaggagaaaaaagacaaaaatggattagtgattctattttgatttatgcacgggttgctttgtctgctgctgc |
37863573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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