View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20009_low_14 (Length: 323)
Name: NF20009_low_14
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20009_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 137 - 316
Target Start/End: Original strand, 38186819 - 38186998
Alignment:
| Q |
137 |
cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg |
236 |
Q |
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| T |
38186819 |
cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg |
38186918 |
T |
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| Q |
237 |
agaatcaaggccataaaggctgaaattcaaacaccaattcaatgattagggctcaaaatgaattgtttttattcatctca |
316 |
Q |
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| T |
38186919 |
agaatcaaggccatgaaggttgaaattgaaacaccaattcaatgattagtgctcaaaatgaattgtttttattcatctca |
38186998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 38186692 - 38186733
Alignment:
| Q |
11 |
catcatcagggtgagcaataaccagcaagacatttctcttcc |
52 |
Q |
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| T |
38186692 |
catcgtcagggtgagcaataaccagcaagacatttctcttcc |
38186733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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