View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20009_low_2 (Length: 632)
Name: NF20009_low_2
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20009_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 578
Target Start/End: Original strand, 41130793 - 41131336
Alignment:
| Q |
13 |
aagaatataggacaaccaaaattgctaccgtgatgcccacaacagcatctgaaaaacaaagacacaaagcattcacatgcatgcattattattaaagaat |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |
|
|
| T |
41130793 |
aagaaaataggacaaccaaaattgctaccgtgatgcccacaacagcatctgaaaaacaaagacacaaagcattctcattcatgcatta------aagaat |
41130886 |
T |
|
| Q |
113 |
aaaattacatttacaacaagaataaagaat-------taaattaagtacatactttgacccaatgatgtactgatcccgctcacagcagaaaggactgca |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41130887 |
aaaa--acatttacaacaagaataaagaataaagaattaaatcaagtacatactttgacccaatgatgtactgatcccgctcacagcagaaaggactgca |
41130984 |
T |
|
| Q |
206 |
tatataaataaaaatattatgattgtatcaagctgatcatatatataaatacaactcagcaagtattaaattgttaaactatatatttctttataacgac |
305 |
Q |
| |
|
|| |||||||||||||||||||||||||| | ||||| ||| ||||||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
41130985 |
ta---aaataaaaatattatgattgtatcaaa--gctcatacata------caactca---agtattaaattgttaaactatttattt----ataac--- |
41131063 |
T |
|
| Q |
306 |
caacctgaaatggagggagtgagaatcccatctcctatgaccatggcagtacccattatagctagaagcaaaagtataattcgtgcaaaatgactattct |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41131064 |
caacctgaaatggagggagtgagaatcccatctcctatgaccatggcagtacccattatagctagaagtaaaagtataattcgtgcaaaatgactattct |
41131163 |
T |
|
| Q |
406 |
caagcatttgtttcagtttatgggctcttttcagctggctagatggtatttctagtttgtaattagagagttccatgtcttcaggttgttgattgggagc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41131164 |
caagcatttgtttcagtttatgggctcttttctgctggctagatggtatttctagtttgtaattagagagttccatgtcttcaggttgttgattgggagc |
41131263 |
T |
|
| Q |
506 |
caaactcatctttatatgcctacatatcaacgagtatagtgcaaacgctccacctacatacattcaaaataat |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41131264 |
caaactcatctttatatgcctacatatcaacgagtatagtgcaaacgctccacctacatacattcaaaataat |
41131336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 576 - 616
Target Start/End: Original strand, 41131358 - 41131398
Alignment:
| Q |
576 |
aattatttaatttacaaagatctaaaatcaaaatatcttta |
616 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41131358 |
aattatttaatttacaaagctctaaaatcaaaatatcttta |
41131398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 561
Target Start/End: Complemental strand, 7798769 - 7798651
Alignment:
| Q |
443 |
gctagatggtatttctagtttgtaattagagagttccatgtcttcaggttgttgattgggagccaaactcatctttatatgcctacatatcaacgagtat |
542 |
Q |
| |
|
|||||||||| |||||| |||||| ||||| || |||||||| || ||||||||||| ||| |||||||| || ||||||||||| ||| || ||| |
|
|
| T |
7798769 |
gctagatggtgtttctaatttgtagttagaaagctccatgtcctctggttgttgatttggaatcaaactcacattggcatgcctacatagcaatgaatat |
7798670 |
T |
|
| Q |
543 |
agtgcaaacgctccaccta |
561 |
Q |
| |
|
|||||||| || ||||||| |
|
|
| T |
7798669 |
agtgcaaatgccccaccta |
7798651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 561
Target Start/End: Complemental strand, 7818040 - 7817922
Alignment:
| Q |
443 |
gctagatggtatttctagtttgtaattagagagttccatgtcttcaggttgttgattgggagccaaactcatctttatatgcctacatatcaacgagtat |
542 |
Q |
| |
|
|||||||||| |||||| |||||| ||||| || |||||||| || ||||||||||| ||| |||||||| || ||||||||||| ||| || ||| |
|
|
| T |
7818040 |
gctagatggtgtttctaatttgtagttagaaagctccatgtcctctggttgttgatttggaatcaaactcacattggcatgcctacatagcaatgaatat |
7817941 |
T |
|
| Q |
543 |
agtgcaaacgctccaccta |
561 |
Q |
| |
|
|||||||| || ||||||| |
|
|
| T |
7817940 |
agtgcaaatgccccaccta |
7817922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University