View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20009_low_20 (Length: 264)

Name: NF20009_low_20
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20009_low_20
NF20009_low_20
[»] chr3 (11 HSPs)
chr3 (18-253)||(16025838-16026073)
chr3 (22-182)||(5160708-5160876)
chr3 (91-196)||(47413796-47413901)
chr3 (18-184)||(5156674-5156848)
chr3 (36-184)||(51944319-51944466)
chr3 (117-193)||(46506879-46506955)
chr3 (92-179)||(46498382-46498469)
chr3 (91-189)||(46236390-46236488)
chr3 (92-184)||(46480222-46480314)
chr3 (137-184)||(46544913-46544960)
chr3 (137-179)||(46539446-46539488)
[»] chr8 (3 HSPs)
chr8 (79-184)||(9675296-9675401)
chr8 (79-184)||(9692318-9692423)
chr8 (79-176)||(21463772-21463869)
[»] chr4 (3 HSPs)
chr4 (96-192)||(15556430-15556526)
chr4 (116-187)||(35162855-35162926)
chr4 (116-184)||(35155838-35155906)
[»] chr2 (4 HSPs)
chr2 (81-169)||(20168616-20168704)
chr2 (81-169)||(20359580-20359668)
chr2 (82-169)||(20145070-20145157)
chr2 (116-169)||(20251386-20251439)
[»] chr7 (6 HSPs)
chr7 (139-179)||(17699607-17699647)
chr7 (139-179)||(17718540-17718580)
chr7 (139-179)||(17736953-17736993)
chr7 (139-179)||(16722593-16722633)
chr7 (139-179)||(17708716-17708756)
chr7 (139-179)||(17736370-17736410)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 16026073 - 16025838
Alignment:
Q  18 tttcatcataaatgcatatctattagaagaaaggttccctatttatctattggcaatccaataagatcactcgacaagaggatttagaacctgccctaca 117  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||| |||| |||||| || || |||||||||    
T  16026073 tttcatcatacatgcatatctattagaagaaaggtttcctatttatctaatggcaatcgaataagatcactcaacaaaaggattgagtacttgccctaca 16025974  T
Q  118 aagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaaaatctactcgaggacttacacccttgacttcgaatacag 217  Q
    ||||||||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16025973 aagaggattgtttcggttaaatcttctctaattagaaataagaaagggtggtcagctacaaaatctactcgaggacttacacccttgactccgaatacag 16025874  T
Q  218 cagcggtgattgcagcagcttcagttccttcttcat 253  Q
    |||| |||| ||||||| ||||||||||||||||||    
T  16025873 cagcagtgactgcagcaacttcagttccttcttcat 16025838  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 5160876 - 5160708
Alignment:
Q  22 atcataaatgcatatctattagaagaaaggttccctatttatctattggcaatccaa--------taagatcactcgacaagaggatttagaacctgccc 113  Q
    ||||||||||||| |||||||||| | |||||||||||||||||| |||||||||||        |||||||||||  |||||||||| || || || ||    
T  5160876 atcataaatgcatttctattagaaaacaggttccctatttatctagtggcaatccaatctactgctaagatcactcatcaagaggattgagtacttgtcc 5160777  T
Q  114 tacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaaaatc 182  Q
     |||||||| || |||   ||| |||||||||| || |||||||||||||||||||||||||| |||||    
T  5160776 aacaaagagaatggttccagtccaatcttctctaatcagaaataagaaagggtggtcagctacgaaatc 5160708  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 47413796 - 47413901
Alignment:
Q  91 acaagaggatttagaacctgccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaaaatctactcgag 190  Q
    ||||||||||| || || || || |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||| |||| ||||     
T  47413796 acaagaggattgagcacatgtccaacaaagaggattgtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtctagtcgat 47413895  T
Q  191 gactta 196  Q
    ||||||    
T  47413896 gactta 47413901  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 5156848 - 5156674
Alignment:
Q  18 tttcatcataaatgcatatctattagaagaaaggttccctatttatctattggcaatccaa--------taagatcactcgacaagaggatttagaacct 109  Q
    |||||||||||||| || |||||||||| | |||||||||||||||||| |||||||||||        |||||||||||  |||| ||||| || || |    
T  5156848 tttcatcataaatgaatttctattagaaaagaggttccctatttatctagtggcaatccaatctactgctaagatcactcatcaagtggattgagcactt 5156749  T
Q  110 gccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaaaatcta 184  Q
    | || |||||||| || |||   ||||| | |||||| |||||||||||||||||||| ||||||||||| ||||    
T  5156748 gtccaacaaagagaatggttccagtcgagttttctctaattagaaataagaaagggtgatcagctacaaagtcta 5156674  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 51944466 - 51944319
Alignment:
Q  36 tctattagaagaaaggttccctatttatctattggcaatccaataagatcactcgacaagaggatttagaacctgccctacaaagaggattgttttggtc 135  Q
    ||||||||||   ||||| |||||||||||||| |||||| | ||||||||| ||  ||| || || || ||||| || ||||||| |||||||   |||    
T  51944466 tctattagaaagtaggtttcctatttatctattagcaatc-actaagatcacccggtaagtgggttgagcacctgtccaacaaagatgattgttccagtc 51944368  T
Q  136 gaatcttctctgattagaaataagaaagggtggtcagctacaaaatcta 184  Q
     |||||||||| || ||||||||||||||||||||||||||||| ||||    
T  51944367 aaatcttctctaatcagaaataagaaagggtggtcagctacaaagtcta 51944319  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 46506879 - 46506955
Alignment:
Q  117 aaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaaaatctactcgaggac 193  Q
    |||||||||||||  |||| |||||||| | |||||||||||||| ||||||||||||||||| |||| ||||||||    
T  46506879 aaagaggattgttccggtccaatcttctttaattagaaataagaatgggtggtcagctacaaagtctagtcgaggac 46506955  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 46498469 - 46498382
Alignment:
Q  92 caagaggatttagaacctgccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaaa 179  Q
    |||||||||| || |||||||| ||||||| ||| |||  |||| ||||||||||||| | ||||||||| |||||||||||||||||    
T  46498469 caagaggattgagcacctgcccaacaaagacgatagttccggtcaaatcttctctgataataaataagaatgggtggtcagctacaaa 46498382  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 46236390 - 46236488
Alignment:
Q  91 acaagaggatttagaacctgccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaaaatctactcga 189  Q
    |||| |||||| || ||||| ||  ||||||||||||||  ||||||| ||||||| |||||||||| ||||||||| ||||||||||| ||| |||||    
T  46236390 acaacaggattgagcacctgtccagcaaagaggattgttccggtcgaaacttctctaattagaaataggaaagggtgatcagctacaaagtcttctcga 46236488  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 46480314 - 46480222
Alignment:
Q  92 caagaggatttagaacctgccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaaaatcta 184  Q
    |||||||||| || ||||| || ||||||| |||||||  |||| | |||||||| || | ||||||||||||||||||||||||||| ||||    
T  46480314 caagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaagtcta 46480222  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 46544960 - 46544913
Alignment:
Q  137 aatcttctctgattagaaataagaaagggtggtcagctacaaaatcta 184  Q
    ||||||||||||| | ||| ||||||||||||||||||||||| ||||    
T  46544960 aatcttctctgatcaaaaacaagaaagggtggtcagctacaaagtcta 46544913  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 46539488 - 46539446
Alignment:
Q  137 aatcttctctgattagaaataagaaagggtggtcagctacaaa 179  Q
    ||||||||||||| | ||| |||||||||||||||||||||||    
T  46539488 aatcttctctgatcaaaaacaagaaagggtggtcagctacaaa 46539446  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 9675296 - 9675401
Alignment:
Q  79 taagatcactcgacaagaggatttagaacctgccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaa 178  Q
    ||||||||| | ||||||||||| |||||||| ||  |||||| |||||||| ||||||||||||||| |||||||||| ||||||||| || |||| ||    
T  9675296 taagatcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaataggaaagggtgatcggctataa 9675395  T
Q  179 aatcta 184  Q
    | ||||    
T  9675396 agtcta 9675401  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 9692318 - 9692423
Alignment:
Q  79 taagatcactcgacaagaggatttagaacctgccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaa 178  Q
    ||||||||| | ||||||||||| |||||||| ||  |||||| ||| |||| |||| |||||||||| |||||||||| ||||||||| || |||| ||    
T  9692318 taagatcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcaaatcttctctaattagaaataggaaagggtgatcggctataa 9692417  T
Q  179 aatcta 184  Q
    | ||||    
T  9692418 agtcta 9692423  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 21463772 - 21463869
Alignment:
Q  79 taagatcactcgacaagaggatttagaacctgccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctac 176  Q
    |||||||||| | |||||||||| || || ||||| | |||||| || |||  || | ||||||||||||| | ||| ||||||||||| ||||||||    
T  21463772 taagatcacttgtcaagaggattgagcacttgcccaataaagagtatggttccggacaaatcttctctgatcaaaaacaagaaagggtgatcagctac 21463869  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 15556526 - 15556430
Alignment:
Q  96 aggatttagaacctgccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaaaatctactcgagga 192  Q
    |||||| || ||||| || ||||||||||||||   |||| |||||||||| |||||||||||||| ||||||||||||||||| |||| |||||||    
T  15556526 aggattaagcacctgtccaacaaagaggattgtgccggtcaaatcttctcttattagaaataagaatgggtggtcagctacaaagtctagtcgagga 15556430  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 35162926 - 35162855
Alignment:
Q  116 caaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaaaatctactc 187  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| || ||||||| ||| |||||||    
T  35162926 caaagaggattgtttgggtcgaatcttctctaattagaaataagaaaggatgatcagctataaagtctactc 35162855  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 35155906 - 35155838
Alignment:
Q  116 caaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggtcagctacaaaatcta 184  Q
    ||||||||||||||| |||| |||||||||| |||| ||||||||||||||| ||||||| ||| ||||    
T  35155906 caaagaggattgtttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtcta 35155838  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 20168616 - 20168704
Alignment:
Q  81 agatcactcgacaagaggatttagaacctgccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggt 169  Q
    |||||||||  |||||||||| || || ||||| |||||||||||||||   ||| ||||||| || |||||||||||||| |||||||    
T  20168616 agatcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggt 20168704  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 20359668 - 20359580
Alignment:
Q  81 agatcactcgacaagaggatttagaacctgccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggt 169  Q
    |||||||||  |||||||||| || || ||||| |||||||||||||||   ||| ||||||| || |||||||||||||| |||||||    
T  20359668 agatcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggt 20359580  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 20145157 - 20145070
Alignment:
Q  82 gatcactcgacaagaggatttagaacctgccctacaaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggt 169  Q
    ||||||||  |||||||||| || || ||||| ||||||||||||| |   ||| ||||||| || |||||||||||||| |||||||    
T  20145157 gatcactcatcaagaggattgagcacttgcccgacaaagaggattgatcccgtcaaatcttccctaattagaaataagaaggggtggt 20145070  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 20251439 - 20251386
Alignment:
Q  116 caaagaggattgttttggtcgaatcttctctgattagaaataagaaagggtggt 169  Q
    ||||||||||||||   ||| |||||||||| |||||||||||||| |||||||    
T  20251439 caaagaggattgttcccgtcaaatcttctctaattagaaataagaaggggtggt 20251386  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 17699647 - 17699607
Alignment:
Q  139 tcttctctgattagaaataagaaagggtggtcagctacaaa 179  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  17699647 tcttctctgatcagaaataaaaaagggtggtcagctacaaa 17699607  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 17718580 - 17718540
Alignment:
Q  139 tcttctctgattagaaataagaaagggtggtcagctacaaa 179  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  17718580 tcttctctgatcagaaataaaaaagggtggtcagctacaaa 17718540  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 17736993 - 17736953
Alignment:
Q  139 tcttctctgattagaaataagaaagggtggtcagctacaaa 179  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  17736993 tcttctctgatcagaaataaaaaagggtggtcagctacaaa 17736953  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 16722633 - 16722593
Alignment:
Q  139 tcttctctgattagaaataagaaagggtggtcagctacaaa 179  Q
    ||||||||||| |||||||| |||||||||||||| |||||    
T  16722633 tcttctctgatcagaaataaaaaagggtggtcagcaacaaa 16722593  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 17708756 - 17708716
Alignment:
Q  139 tcttctctgattagaaataagaaagggtggtcagctacaaa 179  Q
    ||||||||||| |||||||| |||||||||||||| |||||    
T  17708756 tcttctctgatcagaaataaaaaagggtggtcagcaacaaa 17708716  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 17736410 - 17736370
Alignment:
Q  139 tcttctctgattagaaataagaaagggtggtcagctacaaa 179  Q
    ||||||||||| |||||||| |||||||||||||| |||||    
T  17736410 tcttctctgatcagaaataaaaaagggtggtcagcaacaaa 17736370  T

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