View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20009_low_4 (Length: 566)
Name: NF20009_low_4
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20009_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 283 - 410
Target Start/End: Complemental strand, 15083785 - 15083656
Alignment:
| Q |
283 |
agaggatgactatatttgtatcctaatttgcattttattttatataatagtcatgaaatcaaagaagtctcaacataagtgaaactcgcattggccaaaa |
382 |
Q |
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| T |
15083785 |
agaggatgactgtatttgtatcctaatttccattttattttatataatagtcatgaaatcaaagaagtctcaacataagtgaaactcacattggtcaaaa |
15083686 |
T |
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| Q |
383 |
tgc--gctaagtagggatgcaaatttatat |
410 |
Q |
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| T |
15083685 |
tgctaagtaagtagggatgcaaatttatat |
15083656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 410 - 557
Target Start/End: Complemental strand, 15083552 - 15083405
Alignment:
| Q |
410 |
ttctttatcattgataatagtaccacaata-ttcatttatgaatgtaaaaattaatgccaaccaatacaatatcttttagtattttttaaatnnnnnnnn |
508 |
Q |
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| T |
15083552 |
ttctttatcattgataatattaccacaaaaattcttttatgaatgtaaaaattaatgtcaaccaatacaatatcttttggta-tttttaaataaaaatat |
15083454 |
T |
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| Q |
509 |
caatataatttaaaacaaaataactcatcacatcactctattcctatgc |
557 |
Q |
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| T |
15083453 |
atatataatttaaaacaaaataactcattacatcactctattcctatgc |
15083405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 15086374 - 15086322
Alignment:
| Q |
18 |
atagtaagtgagttaaacatggattcaccctagataaagtgaatctaaacgaa |
70 |
Q |
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| T |
15086374 |
atagtaagtgagttaaacatggattcaccctagataaagtgaatctaaacgaa |
15086322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 15086088 - 15086014
Alignment:
| Q |
162 |
tgcatatgttgtactgtttaaattttttatttattagaaataatataatttcttgttggatttagtattgtaaat |
236 |
Q |
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| T |
15086088 |
tgcatatgttggattgtttaaaaaatatatatattataaagaatataatttcttcttggatttagtattgaaaat |
15086014 |
T |
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