View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20009_low_6 (Length: 548)
Name: NF20009_low_6
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20009_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 20 - 533
Target Start/End: Original strand, 4672159 - 4672678
Alignment:
| Q |
20 |
cttagtaacctatgaatgacactcgtgatagaaattcacaagtgtcattcataagtgttggaaacctattatagaaccgttttactgaacctccctcact |
119 |
Q |
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| T |
4672159 |
cttaataacctatgaatgaaactcgtgatagaaattcacaagtgtcattcataagtgttggaaacctatcatagaaccgttttaccgaacctccctcact |
4672258 |
T |
|
| Q |
120 |
ag-tttatcatattttccgtgttggaaattattaccttttttccataaaaacaacgaatggggggcaatggaaaaccaccatagaatga-tcttacgtta |
217 |
Q |
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| T |
4672259 |
aggtttatcatattttccgtgttggaaattattaccttttttccataaaaacaacgaatggggggcaatggaaaaccaccatagaatgactcttacgtta |
4672358 |
T |
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| Q |
218 |
atctcttctttcataaattctggcattgaaaatgtcccaactgaattgatat-----ttatattttttgtgtggaagttgacatcgtcgtttgatcacaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| |
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| T |
4672359 |
atctcttctttcataaattctggcattgaaaatgtctcaactgaattgatatattattttttttttttgtgtggaagttgacatcgtcgtttgatcacaa |
4672458 |
T |
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| Q |
313 |
atgatgagcacaaagtatcgtaacatgatgacatccaacatatgacgaccaagatgtaatggctttcctgaatcgagtatgc---attacttgagactgt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
4672459 |
atgatgagcacaaagtatcgtaacatgatgacatccaacatatgacgaccaagatgtaatgactttcctgaatcgagtatgcattattacttgagactgt |
4672558 |
T |
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| Q |
410 |
gaaatagctacaagggtttgatcggacattattactctttaatcttgagaatgtgaataactggttggattggaatttatccacagaatccatcagtaac |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4672559 |
gaaatagctacaagggtttgatcggacattattactctttaatcttgagaatgtgaataactggttggattggaagttatccacagaatccatcagtaac |
4672658 |
T |
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| Q |
510 |
aatatatatgaatcactagtctat |
533 |
Q |
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| T |
4672659 |
a----atatgaatcactagtctat |
4672678 |
T |
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